Literature DB >> 26791367

HIV Whole-Genome Sequencing Now: Answering Still-Open Questions.

Karin J Metzner1.   

Abstract

Diversity, evolution, and epidemiology of HIV are directly relevant to HIV transmission and pathogenesis; hence, they play a key role in antiretroviral treatment and vaccine design. Global HIV whole-genome sequencing would provide a treasure chest of data to answer many questions still open in these fields. An article by Berg et al. in this issue of theJournal of Clinical Microbiologydescribes a universal strategy to amplify and sequence heterogeneous HIV whole genomes (M. G. Berg, J. Yamaguchi, E. Alessandri-Gradt, R. W. Tell, J.-C. Plantier, and C. A. Brennan, J Clin Microbiol 54:868-882, 2016,http://dx.doi.org/10.1128/JCM.02479-15).
Copyright © 2016, American Society for Microbiology. All Rights Reserved.

Mesh：

Year:  2016        PMID： 26791367      PMCID： PMC4809914          DOI： 10.1128/JCM.03265-15

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  9 in total

1.  A Pan-HIV Strategy for Complete Genome Sequencing.

Authors:  Michael G Berg; Julie Yamaguchi; Elodie Alessandri-Gradt; Robert W Tell; Jean-Christophe Plantier; Catherine A Brennan
Journal:  J Clin Microbiol       Date:  2015-12-23       Impact factor: 5.948

2.  Universal amplification, next-generation sequencing, and assembly of HIV-1 genomes.

Authors:  Astrid Gall; Bridget Ferns; Clare Morris; Simon Watson; Matthew Cotten; Mark Robinson; Neil Berry; Deenan Pillay; Paul Kellam
Journal:  J Clin Microbiol       Date:  2012-09-19       Impact factor: 5.948

3.  An international multicenter study on HIV-1 drug resistance testing by 454 ultra-deep pyrosequencing.

Authors:  Birgitte B Simen; Michael S Braverman; Isabella Abbate; Jeroen Aerssens; Yannick Bidet; Olivier Bouchez; Christian Gabriel; Jacques Izopet; Harald H Kessler; Evelyn Stelzl; Francesca Di Giallonardo; Ralph Schlapbach; Aleksander Radonic; Roger Paredes; Patricia Recordon-Pinson; James Sakwa; Elizabeth P St John; Gudrun G Schmitz-Agheguian; Karin J Metzner; Martin P Däumer
Journal:  J Virol Methods       Date:  2014-04-13       Impact factor: 2.014

4.  Human immunodeficiency virus type 1 drug resistance testing: Evaluation of a new ultra-deep sequencing-based protocol and comparison with the TRUGENE HIV-1 Genotyping Kit.

Authors:  Evelyn Stelzl; Johannes Pröll; Beata Bizon; Norbert Niklas; Martin Danzer; Christa Hackl; Stephanie Stabentheiner; Christian Gabriel; Harald H Kessler
Journal:  J Virol Methods       Date:  2011-08-27       Impact factor: 2.014

5.  HIV drug resistance testing by high-multiplex "wide" sequencing on the MiSeq instrument.

Authors:  H R Lapointe; W Dong; G Q Lee; D R Bangsberg; J N Martin; A R Mocello; Y Boum; A Karakas; D Kirkby; A F Y Poon; P R Harrigan; C J Brumme
Journal:  Antimicrob Agents Chemother       Date:  2015-08-17       Impact factor: 5.191

6.  Clinical implications of HIV-1 minority variants.

Authors:  Jonathan Z Li; Daniel R Kuritzkes
Journal:  Clin Infect Dis       Date:  2013-02-27       Impact factor: 9.079

7.  Challenges and opportunities in estimating viral genetic diversity from next-generation sequencing data.

Authors:  Niko Beerenwinkel; Huldrych F Günthard; Volker Roth; Karin J Metzner
Journal:  Front Microbiol       Date:  2012-09-11       Impact factor: 5.640

8.  An integrated map of HIV genome-wide variation from a population perspective.

Authors:  Guangdi Li; Supinya Piampongsant; Nuno Rodrigues Faria; Arnout Voet; Andrea-Clemencia Pineda-Peña; Ricardo Khouri; Philippe Lemey; Anne-Mieke Vandamme; Kristof Theys
Journal:  Retrovirology       Date:  2015-02-15       Impact factor: 4.602

9.  A Follow-Up of the Multicenter Collaborative Study on HIV-1 Drug Resistance and Tropism Testing Using 454 Ultra Deep Pyrosequencing.

Authors:  Elizabeth P St John; Birgitte B Simen; Gregory S Turenchalk; Michael S Braverman; Isabella Abbate; Jeroen Aerssens; Olivier Bouchez; Christian Gabriel; Jacques Izopet; Karolin Meixenberger; Francesca Di Giallonardo; Ralph Schlapbach; Roger Paredes; James Sakwa; Gudrun G Schmitz-Agheguian; Alexander Thielen; Martin Victor; Karin J Metzner; Martin P Däumer
Journal:  PLoS One       Date:  2016-01-12       Impact factor: 3.240
  9 in total
  3 in total

Review 1.  Next-generation sequencing applications in clinical bacteriology.

Authors:  Yair Motro; Jacob Moran-Gilad
Journal:  Biomol Detect Quantif       Date:  2017-10-23

2.  A Practical Guide to Estimating the Heritability of Pathogen Traits.

Authors:  Venelin Mitov; Tanja Stadler
Journal:  Mol Biol Evol       Date:  2018-03-01       Impact factor: 16.240

3.  Bayesian variable selection using Knockoffs with applications to genomics.

Authors:  Jurel K Yap; Iris Ivy M Gauran
Journal:  Comput Stat       Date:  2022-09-18       Impact factor: 1.405
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.