Literature DB >> 26790413

High-throughput screening of high Monascus pigment-producing strain based on digital image processing.

Meng-lei Xia1,2, Lan Wang1, Zhi-xia Yang3, Hong-zhang Chen4.   

Abstract

This work proposed a new method which applied image processing and support vector machine (SVM) for screening of mold strains. Taking Monascus as example, morphological characteristics of Monascus colony were quantified by image processing. And the association between the characteristics and pigment production capability was determined by SVM. On this basis, a highly automated screening strategy was achieved. The accuracy of the proposed strategy is 80.6 %, which is compatible with the existing methods (81.1 % for microplate and 85.4 % for flask). Meanwhile, the screening of 500 colonies only takes 20-30 min, which is the highest rate among all published results. By applying this automated method, 13 strains with high-predicted production were obtained and the best one produced as 2.8-fold (226 U/mL) of pigment and 1.9-fold (51 mg/L) of lovastatin compared with the parent strain. The current study provides us with an effective and promising method for strain improvement.

Entities:  

Keywords:  Automatized operation; Image processing; Monascus ruber; Pigment; Support vector machine

Mesh:

Substances:

Year:  2016        PMID: 26790413     DOI: 10.1007/s10295-015-1729-z

Source DB:  PubMed          Journal:  J Ind Microbiol Biotechnol        ISSN: 1367-5435            Impact factor:   3.346


  14 in total

1.  A rapid technique for screening of lovastatin-producing strains of Aspergillus terreus by agar plug and Neurospora crassa bioassay.

Authors:  M S Kumar; P M Kumar; H M Sarnaik; A K Sadhukhan
Journal:  J Microbiol Methods       Date:  2000-03       Impact factor: 2.363

Review 2.  Metabolic engineering of the morphology of Aspergillus.

Authors:  M McIntyre; C Müller; J Dynesen; J Nielsen
Journal:  Adv Biochem Eng Biotechnol       Date:  2001       Impact factor: 2.635

3.  Strain selection of Metarrhizium anisopliae by image analysis of colony morphology for consistency of steroid biotransformation.

Authors:  K Yang; J Wang; X Li; X Feng; S Duan
Journal:  Biotechnol Bioeng       Date:  2001-10-05       Impact factor: 4.530

Review 4.  Fungal morphology and metabolite production in submerged mycelial processes.

Authors:  Maria Papagianni
Journal:  Biotechnol Adv       Date:  2004-01       Impact factor: 14.227

5.  Micro-colony array based high throughput platform for enzyme library screening.

Authors:  Brigitte Pohn; Jochen Gerlach; Marcel Scheideler; Hermann Katz; Martina Uray; Horst Bischof; Ingo Klimant; Helmut Schwab
Journal:  J Biotechnol       Date:  2006-11-16       Impact factor: 3.307

6.  Morphological characterization of filamentous microorganisms in submerged cultures by on-line digital image analysis and pattern recognition.

Authors:  S K Treskatis; V Orgeldinger; H Wolf; E D Gilles
Journal:  Biotechnol Bioeng       Date:  1997-01-20       Impact factor: 4.530

7.  Acid phosphatase positional correlations in solid surface fungal cultivation: a fractal interpretation of biochemical differentiation.

Authors:  C L Jones; G T Lonergan; D E Mainwaring
Journal:  Biochem Biophys Res Commun       Date:  1995-03-28       Impact factor: 3.575

8.  Modified mutation method for screening low citrinin-producing strains of Monascus purpureus on rice culture.

Authors:  Jyh-Jye Wang; Chung-Lin Lee; Tzu-Ming Pan
Journal:  J Agric Food Chem       Date:  2004-11-17       Impact factor: 5.279

9.  Efficient gene targeting in ligase IV-deficient Monascus ruber M7 by perturbing the non-homologous end joining pathway.

Authors:  Yi He; Yanchun Shao; Fusheng Chen
Journal:  Fungal Biol       Date:  2014-07-17

10.  Enhanced production of Monacolin K by addition of precursors and surfactants in submerged fermentation of Monascus purpureus 9901.

Authors:  Jun Zhang; Yuan-Long Wang; Li-Ping Lu; Bo-Bo Zhang; Gan-Rong Xu
Journal:  Biotechnol Appl Biochem       Date:  2014-03-20       Impact factor: 2.431

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