Literature DB >> 26789790

A Comparison of Two Approaches to Beta-Flexible Clustering.

L Belbin, D P Faith, G W Milligan.   

Abstract

We introduce a UPGMA based counterpart to the Lance and Williams (1966) p-flexible clustering strategy. This new method is compared with the original p-flexible technique based on WPGMA for a range of fl values from -0.8 to +0.1. Recovery of the known cluster structure from simulated data was evaluated using the Hubert and Arabie (1985) version of the Rand statistic. The algorithm used to generate the simulated clusters in the study included error-free data as well as three other error conditions. The simulated data also varied the number of clusters, the underlying dimensionality, and the density distribution of points to the clusters. Results showed that the flexible UPGMA gives the best recovery for all generated data configurations. Further, the flexible UPGMA method with a small negative β value performed better than the standard UPGMA method where β is set equal to zero. The flexible UPGMA strategy, employed with a narrow β range, is recommended based upon its ability to recover cluster structure over all error conditions.

Entities:  

Year:  1992        PMID: 26789790     DOI: 10.1207/s15327906mbr2703_6

Source DB:  PubMed          Journal:  Multivariate Behav Res        ISSN: 0027-3171            Impact factor:   5.923


  4 in total

1.  Heart Failure Severity Closely Correlates with Intestinal Dysbiosis and Subsequent Metabolomic Alterations.

Authors:  Martina E Spehlmann; Ashraf Y Rangrez; Dhiraj P Dhotre; Nesrin Schmiedel; Nikita Chavan; Corinna Bang; Oliver J Müller; Yogesh S Shouche; Andre Franke; Derk Frank; Norbert Frey
Journal:  Biomedicines       Date:  2022-03-30

2.  Diabetes risk loci-associated pathways are shared across metabolic tissues.

Authors:  Gerard A Bouland; Joline W J Beulens; Joey Nap; Arno R van der Slik; Arnaud Zaldumbide; Leen M 't Hart; Roderick C Slieker
Journal:  BMC Genomics       Date:  2022-05-14       Impact factor: 4.547

3.  Assessing biodiversity and endemism using phylogenetic methods across multiple taxonomic groups.

Authors:  Carlos E González-Orozco; Brent D Mishler; Joseph T Miller; Shawn W Laffan; Nunzio Knerr; Peter Unmack; Arthur Georges; Andrew H Thornhill; Dan F Rosauer; Bernd Gruber
Journal:  Ecol Evol       Date:  2015-10-22       Impact factor: 2.912

4.  The cladistic basis for the phylogenetic diversity (PD) measure links evolutionary features to environmental gradients and supports broad applications of microbial ecology's "phylogenetic beta diversity" framework.

Authors:  Daniel P Faith; Catherine A Lozupone; David Nipperess; Rob Knight
Journal:  Int J Mol Sci       Date:  2009-11-03       Impact factor: 6.208

  4 in total

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