Literature DB >> 26786273

Erratum to: Association mapping of North American spring wheat breeding germplasm reveals loci conferring resistance to Ug99 and other African stem rust races.

P Bajgain1,2, M N Rouse3,4, P Bulli5, S Bhavani6, T Gordon7, R Wanyera8, P N Njau8, W Legesse9, J A Anderson10, M O Pumphrey5.   

Abstract

Entities:  

Year:  2016        PMID: 26786273      PMCID: PMC4719385          DOI: 10.1186/s12870-015-0684-1

Source DB:  PubMed          Journal:  BMC Plant Biol        ISSN: 1471-2229            Impact factor:   4.215


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Erratum

Upon publication of this article [1] it was noticed that Tables Two-Seven (Tables 1, 2, 3, 4, 5 and 6 here) were formatted incorrectly. The Tables have now been updated in the original article and can also be seen below.
Table 1

List of SNPs significantly associated with APR to the Ug99 race group in Kenya and Ethiopia. ‘Chromosome 0’ includes all unmapped SNP markers

SNPa Chrb Pos (cM) P valueR2 (%)c KenOff13d KenMain13e EthOff13f EthOff14g
IWB1351 00.09.18E-041.4---+
IWB11987 00.02.71E-044.0----
IWB13304 00.09.18E-041.4---+
IWB2061700.08.92E-040.5----
IWB40153 00.09.18E-041.4---+
IWB65634 00.02.18E-043.9----
IWA31201B90.39.07E-040.6----
IWB211761B90.39.64E-040.6--+-
IWB310271B90.39.64E-040.6--+-
IWB567711B90.39.34E-040.6--+-
IWB596631B90.39.64E-040.6--+-
IWB49915 2A122.59.18E-041.4---+
IWB49914 2A123.69.18E-041.4---+
IWB226722A159.79.98E-040.6--+-
IWB23692B48.57.68E-040.4----
IWA4275 2B105.98.75E-041.4----
IWA8534 2B126.11.80E-040.3-+--
IWB23660 2B126.31.79E-040.3-+--
IWB25868 2B126.33.11E-040.7-+--
IWB69631 2B126.33.11E-040.7-+--
IWB25869 2B126.53.11E-040.7-+--
IWB32143 2B157.25.05E-044.6----
IWB84812D9.28.44E-040.5----
IWA52033B11.57.97E-040.4----
IWB30730 3B11.57.74E-041.3----
IWB12193 3B11.63.24E-044.2-+--
IWB499243B11.65.65E-040.2----
IWB657373B11.69.15E-040.6----
IWB604243B13.85.02E-040.1----
IWB36021 3B14.18.31E-041.3----
IWA2493 3B32.21.49E-040.2--+-
IWB400044A30.99.12E-040.6-+--
IWB52694 4A43.49.96E-053.2-+--
IWB46973 4A47.08.26E-041.3-+--
IWB56556 4A47.07.54E-041.3----
IWB67877 4A47.08.34E-041.3----
IWB471845A69.63.44E-040.3--+-
IWA233 6A66.08.48E-041.3-+--
IWB24757 6B119.76.33E-041.1----
IWB35697 6B119.71.77E-051.3--++
IWB6474 6B119.76.33E-041.1----
IWB45581 6B120.63.00E-040.6----
IWB5070 7A211.02.19E-043.9----
IWB18747A212.73.18E-040.3----
IWB4830 7A212.74.50E-044.5--+-
IWB625607A213.22.30E-040.6----
IWB475487B153.46.50E-040.3----
IWA41757B177.19.52E-040.6----

aUnderlined SNP markers were detected during the ‘combined’ mapping approach but not during the ‘APR-specific’ mapping approach. SNP markers in bold were detected in both mapping approaches

bChr ‘0’ indicates unmapped SNPs that were significant in the analysis

cR2 Indicates percent of phenotypic variation explained by the significant locus

d-gThe ‘+’ sign indicates that the SNP was also detected in GWAS results in each of the environments. The ‘-’ sign indicates that the SNP was detected only in combined analysis of all environments, and not in individual environments

Table 2

List of SNPs significantly associated with seedling resistance to Ug99 (race TTKSK)

SNPChra Pos (cM) P valueR2 (%)b
IWB215900.03.15E-064.8
IWB1422200.03.45E-042.8
IWB3632400.06.44E-042.5
IWB3706600.03.62E-064.8
IWB4031200.01.97E-076.1
IWB4953700.02.81E-042.9
IWB6892600.03.96E-053.7
IWA6421D67.71.32E-043.2
IWB244973B67.58.43E-064.4
IWB306213B67.51.97E-076.1
IWB420463B67.58.27E-086.5
IWB48233B67.58.43E-064.4
IWB564713B67.51.97E-076.1
IWB614253B67.58.43E-064.4
IWB599293B74.43.91E-053.7
IWB94513B76.93.36E-042.8
IWA53634A40.37.90E-042.4
IWA33945B132.32.29E-053.9
IWB75935B132.36.14E-042.5
IWB8225B134.15.30E-042.6
IWB463185B215.71.56E-054.1
IWA20995B216.79.72E-053.3
IWA21005B216.71.13E-043.3

aChr ‘0’ indicates unmapped SNPs that were significant in the analysis

bR2 Indicates the percent of phenotypic variation explained by the significant locus

Table 3

List of SNPs significantly associated with seedling resistance to race TRTTF

SNPChra Pos (cM) P valueR2 (%)b
IWB84300.01.43E-0415.4
IWB811300.08.36E-0413.2
IWB969900.08.36E-0412.9
IWB2514300.04.62E-0710.8
IWB2702800.05.95E-0410.7
IWB4812100.01.83E-047.7
IWB6453000.08.36E-047.6
IWB6772400.02.26E-046.1
IWB6882200.08.36E-044.2
IWB97941B43.96.06E-044.2
IWB724951B53.36.06E-044.1
IWB113561B62.45.66E-044.0
IWB113571B62.45.66E-043.4
IWB605591B62.46.06E-043.2
IWB654041B62.44.44E-043.2
IWB118191B62.66.06E-043.2
IWB118201B62.64.44E-043.2
IWB345611B62.66.06E-043.6
IWB476841B62.67.00E-043.6
IWB531431B62.69.38E-043.5
IWB65921B62.66.06E-043.5
IWB413061B64.96.06E-043.4
IWB440211D8.75.95E-043.4
IWA85511D50.67.02E-043.4
IWB249615D200.33.70E-043.4
IWB572105D200.33.70E-043.4
IWB124486A1.94.82E-043.4
IWB335956A3.41.14E-043.4
IWB112746A4.73.93E-083.3
IWB537556A4.71.25E-043.2
IWA54166A5.62.81E-093.4
IWA57816A5.73.17E-093.3
IWB76016A6.41.85E-053.7
IWB478426A7.01.31E-043.7
IWA38566A12.51.85E-0528.6
IWA68716A12.51.85E-0527.2
IWB235206A12.51.85E-0525.7
IWB23926A12.56.41E-1225.7
IWB264156A12.51.85E-0524.7
IWB438046A12.51.85E-0524.7
IWB90756A12.53.00E-0624.6
IWA70066A12.82.06E-0524.3
IWB220366A12.94.64E-2020.2
IWB101056A13.55.80E-1016.4
IWB113156A13.57.37E-1815.4
IWB235216A13.55.98E-1315.4
IWB264146A13.56.11E-1215.4
IWB352196A13.51.18E-1715.4
IWB438056A13.51.98E-1814.8
IWB438106A13.51.85E-0514.8
IWB582716A13.52.78E-1914.8
IWB602336A13.56.11E-1214.8
IWB63586A13.51.85E-0512.5
IWB660156A13.56.11E-1212.5
IWB674136A13.57.37E-1812.5
IWB674156A13.58.35E-1812.4
IWB729576A13.51.98E-1812.4
IWA2726A15.71.50E-0412.4
IWB649176A15.73.29E-0411.9
IWB50296A16.02.84E-1511.8
IWB355956A16.62.57E-1210.0
IWB438086A16.62.57E-129.1
IWB649186A16.62.57E-127.6
IWB729566A16.62.57E-126.5
IWA79136A17.02.57E-126.1
IWB235196A17.05.44E-106.0
IWA7056A20.05.56E-066.0
IWA49626A21.14.26E-075.4
IWB314796A21.14.72E-075.4
IWB487516A21.11.01E-085.4
IWB201436A22.02.44E-105.4
IWA45516A22.96.94E-115.4
IWA45526A22.91.11E-105.4
IWB221916A22.96.67E-065.4
IWB284216A22.92.44E-105.4
IWB500196A22.92.44E-105.3
IWB283386A23.06.67E-064.8
IWB15506A25.52.19E-104.4
IWB222166A25.55.42E-054.3
IWB305076A25.52.19E-104.3
IWB401116A25.55.36E-063.8
IWB523256A25.52.06E-103.5
IWB64084.26B9.83.68E-055.3
IWB11653.26B14.52.10E-055.0
IWB149017A124.32.72E-043.9
IWB484667A217.08.24E-043.2

aChr ‘0’ indicates unmapped SNPs that were significant in the analysis

bR2 Indicates the percent of phenotypic variation explained by the significant locus

Table 4

List of SNPs significantly associated with seedling resistance to race TKTTF

SNPChra Pos (cM) P valueR2 (%)b
IWB3187600.08.08E-049.7
IWB7133300.04.84E-049.6
IWB574481A21.58.57E-049.3
IWA86221A24.42.26E-049.2
IWB223244A142.35.22E-069.1
IWA46514A144.43.10E-088.8
IWB279714A144.41.97E-057.5
IWB344784A144.43.37E-056.8
IWB347334A144.41.54E-114.9
IWB35694A144.43.95E-053.9
IWB613124A144.43.95E-053.7
IWB639794A144.41.19E-093.5
IWB683864A144.48.24E-043.2
IWA15054A145.21.15E-083.1
IWA34494A147.13.83E-053.9
IWB25544A147.11.61E-053.2
IWB623974A147.13.09E-0413.9
IWB121464A150.75.47E-0711.1
IWB470194A150.74.39E-079.2
IWB593464A150.75.93E-068.7
IWB14074A151.25.19E-058.1
IWB149104A151.23.47E-058.0
IWB719784A151.23.47E-058.0
IWB593684A151.33.14E-047.8
IWB683224A151.39.43E-067.6
IWB533934A153.01.35E-047.6
IWB354344A154.18.01E-047.5
IWB519264A154.32.22E-047.5
IWB590994A154.39.09E-067.4
IWB701934A154.35.34E-067.4
IWB355454A163.89.37E-077.4
IWA14104A164.15.23E-087.1
IWA40844A164.12.39E-087.0
IWA48584A164.14.55E-076.9
IWA53534A164.11.49E-066.9
IWA73644A164.12.46E-086.5
IWA73654A164.11.38E-086.4
IWB217154A164.15.74E-086.0
IWB233324A164.12.85E-076.0
IWB262564A164.12.37E-066.0
IWB264954A164.11.85E-075.7
IWB2754A164.13.45E-075.7
IWB276794A164.15.06E-045.4
IWB295684A164.11.69E-075.4
IWB30014A164.13.44E-075.3
IWB314474A164.15.51E-075.0
IWB346094A164.11.17E-064.9
IWB363884A164.14.52E-074.9
IWB45174A164.11.46E-054.9
IWB488294A164.19.10E-074.9
IWB492564A164.15.08E-074.7
IWB523934A164.11.16E-064.2
IWB60974A164.12.58E-063.9
IWB723834A164.12.60E-083.7
IWB92764A164.11.90E-073.7
IWA22245A88.08.03E-043.5
IWA28365A94.95.08E-043.2
IWB349275A94.99.63E-043.2
IWB725406B108.96.96E-043.5
IWA32686B109.92.33E-043.2
IWA56056B109.93.19E-043.1
IWA56066B109.99.46E-0410.1
IWB565956B109.92.40E-049.3
IWB27496B110.47.59E-049.3
IWB27516B110.44.59E-048.3
IWB434676B110.45.88E-047.4
IWB486036B110.44.34E-047.3
IWB503676B110.41.37E-046.7
IWB565946B110.45.88E-046.7
IWB615656B110.43.01E-046.7
IWB656796B110.46.45E-046.1
IWB431336B113.35.16E-045.3
IWB615286B113.35.16E-045.2
IWB143756B113.71.68E-044.8
IWB17476B113.75.46E-044.7
IWB303816B113.77.14E-044.4
IWB415156B113.74.78E-054.2
IWB577276B113.77.14E-044.2
IWB582006B113.73.42E-044.2
IWB590066B113.71.88E-054.2
IWB593066B113.76.29E-074.1
IWB703166B113.72.35E-044.1
IWB724716B113.71.52E-044.1
IWB94166B113.74.59E-064.1
IWA42456B114.42.10E-044.0
IWA42466B116.28.75E-043.9
IWB285576B116.24.91E-043.9
IWB59175.26B119.04.47E-043.9
IWB248806B120.31.35E-043.8
IWB248816B120.38.13E-043.7
IWB412166B120.37.51E-043.7
IWB248826B120.61.35E-043.5
IWB35536B120.65.79E-053.5
IWB455816B120.62.20E-053.5
IWB468936B120.69.30E-053.5
IWB660276B120.65.14E-073.4
IWB10711.26B121.82.38E-083.4
IWB236026B121.81.39E-043.4
IWB236036B121.81.86E-043.4
IWB405876B121.81.69E-043.4
IWB448026B121.81.57E-063.3
IWB730726B121.82.25E-083.3
IWB485486B121.91.57E-063.3
IWB288806B122.11.57E-063.3
IWB446696B122.11.08E-073.3
IWB4646B122.17.18E-043.3
IWB711906B122.22.71E-043.2
IWB432136B122.31.69E-043.2
IWB412176B122.96.96E-043.2
IWB470756B122.96.28E-093.2
IWB34899.27A6.43.22E-055.0

aChr ‘0’ indicates unmapped SNPs that were significant in the analysis

bR2 Indicates the percent of phenotypic variation explained by the significant locus

Table 5

Elite spring wheat lines from North American breeding programs that exhibit high level of adult plant resistance (APR) to Ug99 in four field environments

Linea Originb Environmentc Avg severityd
KenOff13KenMain13EthOff13EthOff14
ParkAlberta255202018
9262CIMMYTNA5303022
AC_CadillacManitoba18520211
AC_SplendorManitoba8511NA8
GlencrossManitoba181540519
PeaceManitobaNA51057
FortunaMSU856107
Hi-LineMSUNA5303022
NewanaMSUNA5132013
ThatcherMSU105102011
AC_EatoniaSaskatchewanNA5401018
CDC_AlsakSaskatchewan55351014
CDC_OslerSaskatchewanNA5555
NeepawaSaskatchewan85351014
RoblinSaskatchewanNA525NA15
SelkirkSaskatchewan105105019
10010-20UCD155201013
UC1642UCDNA5452023
UC1682UCD105255023
MN03119-4UMNNA10452025
MN03148UMN255252019
MN08013-2UMN105305024
HW080169WSUNA5403025
Avg_APR_Lines-188312821
Avg_GWAS_Panel-3335525043

a‘Avg_APR_Lines’ represents the mean disease severity (%) across the lines showing high level of APR, and ‘Avg_GWAS_Panel’ represents the mean disease severity among all lines in the GWAS panel

bSource (breeding program) of the line showing APR to Ug99

cDisease severity (%) for each environment

dThe average disease severity (%) across four environments

Table 6

Elite spring wheat lines from North American breeding programs that exhibit high level of seedling resistance to race TTKSK. For each line, the observed seedling infection type (IT) for each race and the corresponding value on the linear scale are presented under the column ‘IT’ and ‘Linear Score’, respectively

Linea Originb TTKSKTRTTFTKTTF
ITLinear ScoreITLinear ScoreITLinear Score
9253CIMMYT2- / 3+42 / 3+52-4
9262CIMMYT2525;2-1
9263CIMMYT;12-1;110; / 33+0
AC_CadillacManitoba22+5250;11
PeaceManitoba22+52-;30;0
Hi-LineMSU0;3-22-433-9
MT0415MSU2533+8011
ThatcherMSU0; / 3+033+833+8
AC_CrystalSaskatchewan2+62532+7
AC_KarmaSaskatchewan252522+5
AC_VistaSaskatchewan22+52522+5
SD4214SDSU2+63+912-3
SD4279SDSU252533+9
PI610750UCD22+52-42-4
UC1643UCD2522-50;11
Avg_Resistant_Lines--4-5-4
Avg_GWAS_Panel--8-7-4

a‘Avg_ Resistant_Lines’ and ‘Avg_GWAS_Panel’ represent the mean linear score among lines resistant to TTKSK, and all lines in the GWAS panel, respectively

bSource (breeding program) of the line showing APR to Ug99

List of SNPs significantly associated with APR to the Ug99 race group in Kenya and Ethiopia. ‘Chromosome 0’ includes all unmapped SNP markers aUnderlined SNP markers were detected during the ‘combined’ mapping approach but not during the ‘APR-specific’ mapping approach. SNP markers in bold were detected in both mapping approaches bChr ‘0’ indicates unmapped SNPs that were significant in the analysis cR2 Indicates percent of phenotypic variation explained by the significant locus d-gThe ‘+’ sign indicates that the SNP was also detected in GWAS results in each of the environments. The ‘-’ sign indicates that the SNP was detected only in combined analysis of all environments, and not in individual environments List of SNPs significantly associated with seedling resistance to Ug99 (race TTKSK) aChr ‘0’ indicates unmapped SNPs that were significant in the analysis bR2 Indicates the percent of phenotypic variation explained by the significant locus List of SNPs significantly associated with seedling resistance to race TRTTF aChr ‘0’ indicates unmapped SNPs that were significant in the analysis bR2 Indicates the percent of phenotypic variation explained by the significant locus List of SNPs significantly associated with seedling resistance to race TKTTF aChr ‘0’ indicates unmapped SNPs that were significant in the analysis bR2 Indicates the percent of phenotypic variation explained by the significant locus Elite spring wheat lines from North American breeding programs that exhibit high level of adult plant resistance (APR) to Ug99 in four field environments a‘Avg_APR_Lines’ represents the mean disease severity (%) across the lines showing high level of APR, and ‘Avg_GWAS_Panel’ represents the mean disease severity among all lines in the GWAS panel bSource (breeding program) of the line showing APR to Ug99 cDisease severity (%) for each environment dThe average disease severity (%) across four environments Elite spring wheat lines from North American breeding programs that exhibit high level of seedling resistance to race TTKSK. For each line, the observed seedling infection type (IT) for each race and the corresponding value on the linear scale are presented under the column ‘IT’ and ‘Linear Score’, respectively a‘Avg_ Resistant_Lines’ and ‘Avg_GWAS_Panel’ represent the mean linear score among lines resistant to TTKSK, and all lines in the GWAS panel, respectively bSource (breeding program) of the line showing APR to Ug99
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