| Literature DB >> 26786273 |
P Bajgain1,2, M N Rouse3,4, P Bulli5, S Bhavani6, T Gordon7, R Wanyera8, P N Njau8, W Legesse9, J A Anderson10, M O Pumphrey5.
Abstract
Entities:
Year: 2016 PMID: 26786273 PMCID: PMC4719385 DOI: 10.1186/s12870-015-0684-1
Source DB: PubMed Journal: BMC Plant Biol ISSN: 1471-2229 Impact factor: 4.215
List of SNPs significantly associated with APR to the Ug99 race group in Kenya and Ethiopia. ‘Chromosome 0’ includes all unmapped SNP markers
| SNPa | Chrb | Pos (cM) |
| R2 (%)c | KenOff13d | KenMain13e | EthOff13f | EthOff14g |
|---|---|---|---|---|---|---|---|---|
|
| 0 | 0.0 | 9.18E-04 | 1.4 | - | - | - | + |
|
| 0 | 0.0 | 2.71E-04 | 4.0 | - | - | - | - |
|
| 0 | 0.0 | 9.18E-04 | 1.4 | - | - | - | + |
| IWB20617 | 0 | 0.0 | 8.92E-04 | 0.5 | - | - | - | - |
|
| 0 | 0.0 | 9.18E-04 | 1.4 | - | - | - | + |
|
| 0 | 0.0 | 2.18E-04 | 3.9 | - | - | - | - |
| IWA3120 | 1B | 90.3 | 9.07E-04 | 0.6 | - | - | - | - |
| IWB21176 | 1B | 90.3 | 9.64E-04 | 0.6 | - | - | + | - |
| IWB31027 | 1B | 90.3 | 9.64E-04 | 0.6 | - | - | + | - |
| IWB56771 | 1B | 90.3 | 9.34E-04 | 0.6 | - | - | + | - |
| IWB59663 | 1B | 90.3 | 9.64E-04 | 0.6 | - | - | + | - |
|
| 2A | 122.5 | 9.18E-04 | 1.4 | - | - | - | + |
|
| 2A | 123.6 | 9.18E-04 | 1.4 | - | - | - | + |
| IWB22672 | 2A | 159.7 | 9.98E-04 | 0.6 | - | - | + | - |
| IWB2369 | 2B | 48.5 | 7.68E-04 | 0.4 | - | - | - | - |
|
| 2B | 105.9 | 8.75E-04 | 1.4 | - | - | - | - |
|
| 2B | 126.1 | 1.80E-04 | 0.3 | - | + | - | - |
|
| 2B | 126.3 | 1.79E-04 | 0.3 | - | + | - | - |
|
| 2B | 126.3 | 3.11E-04 | 0.7 | - | + | - | - |
|
| 2B | 126.3 | 3.11E-04 | 0.7 | - | + | - | - |
|
| 2B | 126.5 | 3.11E-04 | 0.7 | - | + | - | - |
|
| 2B | 157.2 | 5.05E-04 | 4.6 | - | - | - | - |
| IWB8481 | 2D | 9.2 | 8.44E-04 | 0.5 | - | - | - | - |
| IWA5203 | 3B | 11.5 | 7.97E-04 | 0.4 | - | - | - | - |
|
| 3B | 11.5 | 7.74E-04 | 1.3 | - | - | - | - |
|
| 3B | 11.6 | 3.24E-04 | 4.2 | - | + | - | - |
| IWB49924 | 3B | 11.6 | 5.65E-04 | 0.2 | - | - | - | - |
| IWB65737 | 3B | 11.6 | 9.15E-04 | 0.6 | - | - | - | - |
| IWB60424 | 3B | 13.8 | 5.02E-04 | 0.1 | - | - | - | - |
|
| 3B | 14.1 | 8.31E-04 | 1.3 | - | - | - | - |
|
| 3B | 32.2 | 1.49E-04 | 0.2 | - | - | + | - |
| IWB40004 | 4A | 30.9 | 9.12E-04 | 0.6 | - | + | - | - |
|
| 4A | 43.4 | 9.96E-05 | 3.2 | - | + | - | - |
|
| 4A | 47.0 | 8.26E-04 | 1.3 | - | + | - | - |
|
| 4A | 47.0 | 7.54E-04 | 1.3 | - | - | - | - |
|
| 4A | 47.0 | 8.34E-04 | 1.3 | - | - | - | - |
| IWB47184 | 5A | 69.6 | 3.44E-04 | 0.3 | - | - | + | - |
|
| 6A | 66.0 | 8.48E-04 | 1.3 | - | + | - | - |
|
| 6B | 119.7 | 6.33E-04 | 1.1 | - | - | - | - |
|
| 6B | 119.7 | 1.77E-05 | 1.3 | - | - | + | + |
|
| 6B | 119.7 | 6.33E-04 | 1.1 | - | - | - | - |
|
| 6B | 120.6 | 3.00E-04 | 0.6 | - | - | - | - |
|
| 7A | 211.0 | 2.19E-04 | 3.9 | - | - | - | - |
| IWB1874 | 7A | 212.7 | 3.18E-04 | 0.3 | - | - | - | - |
|
| 7A | 212.7 | 4.50E-04 | 4.5 | - | - | + | - |
| IWB62560 | 7A | 213.2 | 2.30E-04 | 0.6 | - | - | - | - |
| IWB47548 | 7B | 153.4 | 6.50E-04 | 0.3 | - | - | - | - |
| IWA4175 | 7B | 177.1 | 9.52E-04 | 0.6 | - | - | - | - |
aUnderlined SNP markers were detected during the ‘combined’ mapping approach but not during the ‘APR-specific’ mapping approach. SNP markers in bold were detected in both mapping approaches
bChr ‘0’ indicates unmapped SNPs that were significant in the analysis
cR2 Indicates percent of phenotypic variation explained by the significant locus
d-gThe ‘+’ sign indicates that the SNP was also detected in GWAS results in each of the environments. The ‘-’ sign indicates that the SNP was detected only in combined analysis of all environments, and not in individual environments
List of SNPs significantly associated with seedling resistance to Ug99 (race TTKSK)
| SNP | Chra | Pos (cM) |
| R2 (%)b |
|---|---|---|---|---|
| IWB2159 | 0 | 0.0 | 3.15E-06 | 4.8 |
| IWB14222 | 0 | 0.0 | 3.45E-04 | 2.8 |
| IWB36324 | 0 | 0.0 | 6.44E-04 | 2.5 |
| IWB37066 | 0 | 0.0 | 3.62E-06 | 4.8 |
| IWB40312 | 0 | 0.0 | 1.97E-07 | 6.1 |
| IWB49537 | 0 | 0.0 | 2.81E-04 | 2.9 |
| IWB68926 | 0 | 0.0 | 3.96E-05 | 3.7 |
| IWA642 | 1D | 67.7 | 1.32E-04 | 3.2 |
| IWB24497 | 3B | 67.5 | 8.43E-06 | 4.4 |
| IWB30621 | 3B | 67.5 | 1.97E-07 | 6.1 |
| IWB42046 | 3B | 67.5 | 8.27E-08 | 6.5 |
| IWB4823 | 3B | 67.5 | 8.43E-06 | 4.4 |
| IWB56471 | 3B | 67.5 | 1.97E-07 | 6.1 |
| IWB61425 | 3B | 67.5 | 8.43E-06 | 4.4 |
| IWB59929 | 3B | 74.4 | 3.91E-05 | 3.7 |
| IWB9451 | 3B | 76.9 | 3.36E-04 | 2.8 |
| IWA5363 | 4A | 40.3 | 7.90E-04 | 2.4 |
| IWA3394 | 5B | 132.3 | 2.29E-05 | 3.9 |
| IWB7593 | 5B | 132.3 | 6.14E-04 | 2.5 |
| IWB822 | 5B | 134.1 | 5.30E-04 | 2.6 |
| IWB46318 | 5B | 215.7 | 1.56E-05 | 4.1 |
| IWA2099 | 5B | 216.7 | 9.72E-05 | 3.3 |
| IWA2100 | 5B | 216.7 | 1.13E-04 | 3.3 |
aChr ‘0’ indicates unmapped SNPs that were significant in the analysis
bR2 Indicates the percent of phenotypic variation explained by the significant locus
List of SNPs significantly associated with seedling resistance to race TRTTF
| SNP | Chra | Pos (cM) |
| R2 (%)b |
|---|---|---|---|---|
| IWB843 | 0 | 0.0 | 1.43E-04 | 15.4 |
| IWB8113 | 0 | 0.0 | 8.36E-04 | 13.2 |
| IWB9699 | 0 | 0.0 | 8.36E-04 | 12.9 |
| IWB25143 | 0 | 0.0 | 4.62E-07 | 10.8 |
| IWB27028 | 0 | 0.0 | 5.95E-04 | 10.7 |
| IWB48121 | 0 | 0.0 | 1.83E-04 | 7.7 |
| IWB64530 | 0 | 0.0 | 8.36E-04 | 7.6 |
| IWB67724 | 0 | 0.0 | 2.26E-04 | 6.1 |
| IWB68822 | 0 | 0.0 | 8.36E-04 | 4.2 |
| IWB9794 | 1B | 43.9 | 6.06E-04 | 4.2 |
| IWB72495 | 1B | 53.3 | 6.06E-04 | 4.1 |
| IWB11356 | 1B | 62.4 | 5.66E-04 | 4.0 |
| IWB11357 | 1B | 62.4 | 5.66E-04 | 3.4 |
| IWB60559 | 1B | 62.4 | 6.06E-04 | 3.2 |
| IWB65404 | 1B | 62.4 | 4.44E-04 | 3.2 |
| IWB11819 | 1B | 62.6 | 6.06E-04 | 3.2 |
| IWB11820 | 1B | 62.6 | 4.44E-04 | 3.2 |
| IWB34561 | 1B | 62.6 | 6.06E-04 | 3.6 |
| IWB47684 | 1B | 62.6 | 7.00E-04 | 3.6 |
| IWB53143 | 1B | 62.6 | 9.38E-04 | 3.5 |
| IWB6592 | 1B | 62.6 | 6.06E-04 | 3.5 |
| IWB41306 | 1B | 64.9 | 6.06E-04 | 3.4 |
| IWB44021 | 1D | 8.7 | 5.95E-04 | 3.4 |
| IWA8551 | 1D | 50.6 | 7.02E-04 | 3.4 |
| IWB24961 | 5D | 200.3 | 3.70E-04 | 3.4 |
| IWB57210 | 5D | 200.3 | 3.70E-04 | 3.4 |
| IWB12448 | 6A | 1.9 | 4.82E-04 | 3.4 |
| IWB33595 | 6A | 3.4 | 1.14E-04 | 3.4 |
| IWB11274 | 6A | 4.7 | 3.93E-08 | 3.3 |
| IWB53755 | 6A | 4.7 | 1.25E-04 | 3.2 |
| IWA5416 | 6A | 5.6 | 2.81E-09 | 3.4 |
| IWA5781 | 6A | 5.7 | 3.17E-09 | 3.3 |
| IWB7601 | 6A | 6.4 | 1.85E-05 | 3.7 |
| IWB47842 | 6A | 7.0 | 1.31E-04 | 3.7 |
| IWA3856 | 6A | 12.5 | 1.85E-05 | 28.6 |
| IWA6871 | 6A | 12.5 | 1.85E-05 | 27.2 |
| IWB23520 | 6A | 12.5 | 1.85E-05 | 25.7 |
| IWB2392 | 6A | 12.5 | 6.41E-12 | 25.7 |
| IWB26415 | 6A | 12.5 | 1.85E-05 | 24.7 |
| IWB43804 | 6A | 12.5 | 1.85E-05 | 24.7 |
| IWB9075 | 6A | 12.5 | 3.00E-06 | 24.6 |
| IWA7006 | 6A | 12.8 | 2.06E-05 | 24.3 |
| IWB22036 | 6A | 12.9 | 4.64E-20 | 20.2 |
| IWB10105 | 6A | 13.5 | 5.80E-10 | 16.4 |
| IWB11315 | 6A | 13.5 | 7.37E-18 | 15.4 |
| IWB23521 | 6A | 13.5 | 5.98E-13 | 15.4 |
| IWB26414 | 6A | 13.5 | 6.11E-12 | 15.4 |
| IWB35219 | 6A | 13.5 | 1.18E-17 | 15.4 |
| IWB43805 | 6A | 13.5 | 1.98E-18 | 14.8 |
| IWB43810 | 6A | 13.5 | 1.85E-05 | 14.8 |
| IWB58271 | 6A | 13.5 | 2.78E-19 | 14.8 |
| IWB60233 | 6A | 13.5 | 6.11E-12 | 14.8 |
| IWB6358 | 6A | 13.5 | 1.85E-05 | 12.5 |
| IWB66015 | 6A | 13.5 | 6.11E-12 | 12.5 |
| IWB67413 | 6A | 13.5 | 7.37E-18 | 12.5 |
| IWB67415 | 6A | 13.5 | 8.35E-18 | 12.4 |
| IWB72957 | 6A | 13.5 | 1.98E-18 | 12.4 |
| IWA272 | 6A | 15.7 | 1.50E-04 | 12.4 |
| IWB64917 | 6A | 15.7 | 3.29E-04 | 11.9 |
| IWB5029 | 6A | 16.0 | 2.84E-15 | 11.8 |
| IWB35595 | 6A | 16.6 | 2.57E-12 | 10.0 |
| IWB43808 | 6A | 16.6 | 2.57E-12 | 9.1 |
| IWB64918 | 6A | 16.6 | 2.57E-12 | 7.6 |
| IWB72956 | 6A | 16.6 | 2.57E-12 | 6.5 |
| IWA7913 | 6A | 17.0 | 2.57E-12 | 6.1 |
| IWB23519 | 6A | 17.0 | 5.44E-10 | 6.0 |
| IWA705 | 6A | 20.0 | 5.56E-06 | 6.0 |
| IWA4962 | 6A | 21.1 | 4.26E-07 | 5.4 |
| IWB31479 | 6A | 21.1 | 4.72E-07 | 5.4 |
| IWB48751 | 6A | 21.1 | 1.01E-08 | 5.4 |
| IWB20143 | 6A | 22.0 | 2.44E-10 | 5.4 |
| IWA4551 | 6A | 22.9 | 6.94E-11 | 5.4 |
| IWA4552 | 6A | 22.9 | 1.11E-10 | 5.4 |
| IWB22191 | 6A | 22.9 | 6.67E-06 | 5.4 |
| IWB28421 | 6A | 22.9 | 2.44E-10 | 5.4 |
| IWB50019 | 6A | 22.9 | 2.44E-10 | 5.3 |
| IWB28338 | 6A | 23.0 | 6.67E-06 | 4.8 |
| IWB1550 | 6A | 25.5 | 2.19E-10 | 4.4 |
| IWB22216 | 6A | 25.5 | 5.42E-05 | 4.3 |
| IWB30507 | 6A | 25.5 | 2.19E-10 | 4.3 |
| IWB40111 | 6A | 25.5 | 5.36E-06 | 3.8 |
| IWB52325 | 6A | 25.5 | 2.06E-10 | 3.5 |
| IWB64084.2 | 6B | 9.8 | 3.68E-05 | 5.3 |
| IWB11653.2 | 6B | 14.5 | 2.10E-05 | 5.0 |
| IWB14901 | 7A | 124.3 | 2.72E-04 | 3.9 |
| IWB48466 | 7A | 217.0 | 8.24E-04 | 3.2 |
aChr ‘0’ indicates unmapped SNPs that were significant in the analysis
bR2 Indicates the percent of phenotypic variation explained by the significant locus
List of SNPs significantly associated with seedling resistance to race TKTTF
| SNP | Chra | Pos (cM) |
| R2 (%)b |
|---|---|---|---|---|
| IWB31876 | 0 | 0.0 | 8.08E-04 | 9.7 |
| IWB71333 | 0 | 0.0 | 4.84E-04 | 9.6 |
| IWB57448 | 1A | 21.5 | 8.57E-04 | 9.3 |
| IWA8622 | 1A | 24.4 | 2.26E-04 | 9.2 |
| IWB22324 | 4A | 142.3 | 5.22E-06 | 9.1 |
| IWA4651 | 4A | 144.4 | 3.10E-08 | 8.8 |
| IWB27971 | 4A | 144.4 | 1.97E-05 | 7.5 |
| IWB34478 | 4A | 144.4 | 3.37E-05 | 6.8 |
| IWB34733 | 4A | 144.4 | 1.54E-11 | 4.9 |
| IWB3569 | 4A | 144.4 | 3.95E-05 | 3.9 |
| IWB61312 | 4A | 144.4 | 3.95E-05 | 3.7 |
| IWB63979 | 4A | 144.4 | 1.19E-09 | 3.5 |
| IWB68386 | 4A | 144.4 | 8.24E-04 | 3.2 |
| IWA1505 | 4A | 145.2 | 1.15E-08 | 3.1 |
| IWA3449 | 4A | 147.1 | 3.83E-05 | 3.9 |
| IWB2554 | 4A | 147.1 | 1.61E-05 | 3.2 |
| IWB62397 | 4A | 147.1 | 3.09E-04 | 13.9 |
| IWB12146 | 4A | 150.7 | 5.47E-07 | 11.1 |
| IWB47019 | 4A | 150.7 | 4.39E-07 | 9.2 |
| IWB59346 | 4A | 150.7 | 5.93E-06 | 8.7 |
| IWB1407 | 4A | 151.2 | 5.19E-05 | 8.1 |
| IWB14910 | 4A | 151.2 | 3.47E-05 | 8.0 |
| IWB71978 | 4A | 151.2 | 3.47E-05 | 8.0 |
| IWB59368 | 4A | 151.3 | 3.14E-04 | 7.8 |
| IWB68322 | 4A | 151.3 | 9.43E-06 | 7.6 |
| IWB53393 | 4A | 153.0 | 1.35E-04 | 7.6 |
| IWB35434 | 4A | 154.1 | 8.01E-04 | 7.5 |
| IWB51926 | 4A | 154.3 | 2.22E-04 | 7.5 |
| IWB59099 | 4A | 154.3 | 9.09E-06 | 7.4 |
| IWB70193 | 4A | 154.3 | 5.34E-06 | 7.4 |
| IWB35545 | 4A | 163.8 | 9.37E-07 | 7.4 |
| IWA1410 | 4A | 164.1 | 5.23E-08 | 7.1 |
| IWA4084 | 4A | 164.1 | 2.39E-08 | 7.0 |
| IWA4858 | 4A | 164.1 | 4.55E-07 | 6.9 |
| IWA5353 | 4A | 164.1 | 1.49E-06 | 6.9 |
| IWA7364 | 4A | 164.1 | 2.46E-08 | 6.5 |
| IWA7365 | 4A | 164.1 | 1.38E-08 | 6.4 |
| IWB21715 | 4A | 164.1 | 5.74E-08 | 6.0 |
| IWB23332 | 4A | 164.1 | 2.85E-07 | 6.0 |
| IWB26256 | 4A | 164.1 | 2.37E-06 | 6.0 |
| IWB26495 | 4A | 164.1 | 1.85E-07 | 5.7 |
| IWB275 | 4A | 164.1 | 3.45E-07 | 5.7 |
| IWB27679 | 4A | 164.1 | 5.06E-04 | 5.4 |
| IWB29568 | 4A | 164.1 | 1.69E-07 | 5.4 |
| IWB3001 | 4A | 164.1 | 3.44E-07 | 5.3 |
| IWB31447 | 4A | 164.1 | 5.51E-07 | 5.0 |
| IWB34609 | 4A | 164.1 | 1.17E-06 | 4.9 |
| IWB36388 | 4A | 164.1 | 4.52E-07 | 4.9 |
| IWB4517 | 4A | 164.1 | 1.46E-05 | 4.9 |
| IWB48829 | 4A | 164.1 | 9.10E-07 | 4.9 |
| IWB49256 | 4A | 164.1 | 5.08E-07 | 4.7 |
| IWB52393 | 4A | 164.1 | 1.16E-06 | 4.2 |
| IWB6097 | 4A | 164.1 | 2.58E-06 | 3.9 |
| IWB72383 | 4A | 164.1 | 2.60E-08 | 3.7 |
| IWB9276 | 4A | 164.1 | 1.90E-07 | 3.7 |
| IWA2224 | 5A | 88.0 | 8.03E-04 | 3.5 |
| IWA2836 | 5A | 94.9 | 5.08E-04 | 3.2 |
| IWB34927 | 5A | 94.9 | 9.63E-04 | 3.2 |
| IWB72540 | 6B | 108.9 | 6.96E-04 | 3.5 |
| IWA3268 | 6B | 109.9 | 2.33E-04 | 3.2 |
| IWA5605 | 6B | 109.9 | 3.19E-04 | 3.1 |
| IWA5606 | 6B | 109.9 | 9.46E-04 | 10.1 |
| IWB56595 | 6B | 109.9 | 2.40E-04 | 9.3 |
| IWB2749 | 6B | 110.4 | 7.59E-04 | 9.3 |
| IWB2751 | 6B | 110.4 | 4.59E-04 | 8.3 |
| IWB43467 | 6B | 110.4 | 5.88E-04 | 7.4 |
| IWB48603 | 6B | 110.4 | 4.34E-04 | 7.3 |
| IWB50367 | 6B | 110.4 | 1.37E-04 | 6.7 |
| IWB56594 | 6B | 110.4 | 5.88E-04 | 6.7 |
| IWB61565 | 6B | 110.4 | 3.01E-04 | 6.7 |
| IWB65679 | 6B | 110.4 | 6.45E-04 | 6.1 |
| IWB43133 | 6B | 113.3 | 5.16E-04 | 5.3 |
| IWB61528 | 6B | 113.3 | 5.16E-04 | 5.2 |
| IWB14375 | 6B | 113.7 | 1.68E-04 | 4.8 |
| IWB1747 | 6B | 113.7 | 5.46E-04 | 4.7 |
| IWB30381 | 6B | 113.7 | 7.14E-04 | 4.4 |
| IWB41515 | 6B | 113.7 | 4.78E-05 | 4.2 |
| IWB57727 | 6B | 113.7 | 7.14E-04 | 4.2 |
| IWB58200 | 6B | 113.7 | 3.42E-04 | 4.2 |
| IWB59006 | 6B | 113.7 | 1.88E-05 | 4.2 |
| IWB59306 | 6B | 113.7 | 6.29E-07 | 4.1 |
| IWB70316 | 6B | 113.7 | 2.35E-04 | 4.1 |
| IWB72471 | 6B | 113.7 | 1.52E-04 | 4.1 |
| IWB9416 | 6B | 113.7 | 4.59E-06 | 4.1 |
| IWA4245 | 6B | 114.4 | 2.10E-04 | 4.0 |
| IWA4246 | 6B | 116.2 | 8.75E-04 | 3.9 |
| IWB28557 | 6B | 116.2 | 4.91E-04 | 3.9 |
| IWB59175.2 | 6B | 119.0 | 4.47E-04 | 3.9 |
| IWB24880 | 6B | 120.3 | 1.35E-04 | 3.8 |
| IWB24881 | 6B | 120.3 | 8.13E-04 | 3.7 |
| IWB41216 | 6B | 120.3 | 7.51E-04 | 3.7 |
| IWB24882 | 6B | 120.6 | 1.35E-04 | 3.5 |
| IWB3553 | 6B | 120.6 | 5.79E-05 | 3.5 |
| IWB45581 | 6B | 120.6 | 2.20E-05 | 3.5 |
| IWB46893 | 6B | 120.6 | 9.30E-05 | 3.5 |
| IWB66027 | 6B | 120.6 | 5.14E-07 | 3.4 |
| IWB10711.2 | 6B | 121.8 | 2.38E-08 | 3.4 |
| IWB23602 | 6B | 121.8 | 1.39E-04 | 3.4 |
| IWB23603 | 6B | 121.8 | 1.86E-04 | 3.4 |
| IWB40587 | 6B | 121.8 | 1.69E-04 | 3.4 |
| IWB44802 | 6B | 121.8 | 1.57E-06 | 3.3 |
| IWB73072 | 6B | 121.8 | 2.25E-08 | 3.3 |
| IWB48548 | 6B | 121.9 | 1.57E-06 | 3.3 |
| IWB28880 | 6B | 122.1 | 1.57E-06 | 3.3 |
| IWB44669 | 6B | 122.1 | 1.08E-07 | 3.3 |
| IWB464 | 6B | 122.1 | 7.18E-04 | 3.3 |
| IWB71190 | 6B | 122.2 | 2.71E-04 | 3.2 |
| IWB43213 | 6B | 122.3 | 1.69E-04 | 3.2 |
| IWB41217 | 6B | 122.9 | 6.96E-04 | 3.2 |
| IWB47075 | 6B | 122.9 | 6.28E-09 | 3.2 |
| IWB34899.2 | 7A | 6.4 | 3.22E-05 | 5.0 |
aChr ‘0’ indicates unmapped SNPs that were significant in the analysis
bR2 Indicates the percent of phenotypic variation explained by the significant locus
Elite spring wheat lines from North American breeding programs that exhibit high level of adult plant resistance (APR) to Ug99 in four field environments
| Linea | Originb | Environmentc | Avg severityd | |||
|---|---|---|---|---|---|---|
| KenOff13 | KenMain13 | EthOff13 | EthOff14 | |||
| Park | Alberta | 25 | 5 | 20 | 20 | 18 |
| 9262 | CIMMYT | NA | 5 | 30 | 30 | 22 |
| AC_Cadillac | Manitoba | 18 | 5 | 20 | 2 | 11 |
| AC_Splendor | Manitoba | 8 | 5 | 11 | NA | 8 |
| Glencross | Manitoba | 18 | 15 | 40 | 5 | 19 |
| Peace | Manitoba | NA | 5 | 10 | 5 | 7 |
| Fortuna | MSU | 8 | 5 | 6 | 10 | 7 |
| Hi-Line | MSU | NA | 5 | 30 | 30 | 22 |
| Newana | MSU | NA | 5 | 13 | 20 | 13 |
| Thatcher | MSU | 10 | 5 | 10 | 20 | 11 |
| AC_Eatonia | Saskatchewan | NA | 5 | 40 | 10 | 18 |
| CDC_Alsak | Saskatchewan | 5 | 5 | 35 | 10 | 14 |
| CDC_Osler | Saskatchewan | NA | 5 | 5 | 5 | 5 |
| Neepawa | Saskatchewan | 8 | 5 | 35 | 10 | 14 |
| Roblin | Saskatchewan | NA | 5 | 25 | NA | 15 |
| Selkirk | Saskatchewan | 10 | 5 | 10 | 50 | 19 |
| 10010-20 | UCD | 15 | 5 | 20 | 10 | 13 |
| UC1642 | UCD | NA | 5 | 45 | 20 | 23 |
| UC1682 | UCD | 10 | 5 | 25 | 50 | 23 |
| MN03119-4 | UMN | NA | 10 | 45 | 20 | 25 |
| MN03148 | UMN | 25 | 5 | 25 | 20 | 19 |
| MN08013-2 | UMN | 10 | 5 | 30 | 50 | 24 |
| HW080169 | WSU | NA | 5 | 40 | 30 | 25 |
| Avg_APR_Lines | - | 18 | 8 | 31 | 28 | 21 |
| Avg_GWAS_Panel | - | 33 | 35 | 52 | 50 | 43 |
a‘Avg_APR_Lines’ represents the mean disease severity (%) across the lines showing high level of APR, and ‘Avg_GWAS_Panel’ represents the mean disease severity among all lines in the GWAS panel
bSource (breeding program) of the line showing APR to Ug99
cDisease severity (%) for each environment
dThe average disease severity (%) across four environments
Elite spring wheat lines from North American breeding programs that exhibit high level of seedling resistance to race TTKSK. For each line, the observed seedling infection type (IT) for each race and the corresponding value on the linear scale are presented under the column ‘IT’ and ‘Linear Score’, respectively
| Linea | Originb | TTKSK | TRTTF | TKTTF | |||
|---|---|---|---|---|---|---|---|
| IT | Linear Score | IT | Linear Score | IT | Linear Score | ||
| 9253 | CIMMYT | 2- / 3+ | 4 | 2 / 3+ | 5 | 2- | 4 |
| 9262 | CIMMYT | 2 | 5 | 2 | 5 | ;2- | 1 |
| 9263 | CIMMYT | ;12- | 1 | ;1 | 1 | 0; / 33+ | 0 |
| AC_Cadillac | Manitoba | 22+ | 5 | 2 | 5 | 0;1 | 1 |
| Peace | Manitoba | 22+ | 5 | 2-; | 3 | 0; | 0 |
| Hi-Line | MSU | 0;3- | 2 | 2- | 4 | 33- | 9 |
| MT0415 | MSU | 2 | 5 | 33+ | 8 | 01 | 1 |
| Thatcher | MSU | 0; / 3+ | 0 | 33+ | 8 | 33+ | 8 |
| AC_Crystal | Saskatchewan | 2+ | 6 | 2 | 5 | 32+ | 7 |
| AC_Karma | Saskatchewan | 2 | 5 | 2 | 5 | 22+ | 5 |
| AC_Vista | Saskatchewan | 22+ | 5 | 2 | 5 | 22+ | 5 |
| SD4214 | SDSU | 2+ | 6 | 3+ | 9 | 12- | 3 |
| SD4279 | SDSU | 2 | 5 | 2 | 5 | 33+ | 9 |
| PI610750 | UCD | 22+ | 5 | 2- | 4 | 2- | 4 |
| UC1643 | UCD | 2 | 5 | 22- | 5 | 0;1 | 1 |
| Avg_Resistant_Lines | - | - | 4 | - | 5 | - | 4 |
| Avg_GWAS_Panel | - | - | 8 | - | 7 | - | 4 |
a‘Avg_ Resistant_Lines’ and ‘Avg_GWAS_Panel’ represent the mean linear score among lines resistant to TTKSK, and all lines in the GWAS panel, respectively
bSource (breeding program) of the line showing APR to Ug99