Literature DB >> 26785392

It's difficult, but important, to make negative predictions.

Richard V Williams1, Alexander Amberg2, Alessandro Brigo3, Laurence Coquin4, Amanda Giddings5, Susanne Glowienke6, Nigel Greene7, Robert Jolly8, Ray Kemper9, Catherine O'Leary-Steele4, Alexis Parenty6, Hans-Peter Spirkl2, Susanne A Stalford4, Sandy K Weiner10, Joerg Wichard11.   

Abstract

At the confluence of predictive and regulatory toxicologies, negative predictions may be the thin green line that prevents populations from being exposed to harm. Here, two novel approaches to making confident and robust negative in silico predictions for mutagenicity (as defined by the Ames test) have been evaluated. Analyses of 12 data sets containing >13,000 compounds, showed that negative predictivity is high (∼90%) for the best approach and features that either reduce the accuracy or certainty of negative predictions are identified as misclassified or unclassified respectively. However, negative predictivity remains high (and in excess of the prevalence of non-mutagens) even in the presence of these features, indicating that they are not flags for mutagenicity.
Copyright © 2016 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  (Q)SAR; Expert assessment; Expert system; ICH M7; In silico toxicology; Negative predictions

Mesh:

Substances:

Year:  2016        PMID: 26785392     DOI: 10.1016/j.yrtph.2016.01.008

Source DB:  PubMed          Journal:  Regul Toxicol Pharmacol        ISSN: 0273-2300            Impact factor:   3.271


  10 in total

1.  Use of Lhasa Limited Products for the In Silico Prediction of Drug Toxicity.

Authors:  David J Ponting; Michael J Burns; Robert S Foster; Rachel Hemingway; Grace Kocks; Donna S MacMillan; Andrew L Shannon-Little; Rachael E Tennant; Jessica R Tidmarsh; David J Yeo
Journal:  Methods Mol Biol       Date:  2022

Review 2.  In silico toxicology: From structure-activity relationships towards deep learning and adverse outcome pathways.

Authors:  Jennifer Hemmerich; Gerhard F Ecker
Journal:  Wiley Interdiscip Rev Comput Mol Sci       Date:  2020-03-31

3.  Transitioning to composite bacterial mutagenicity models in ICH M7 (Q)SAR analyses.

Authors:  Curran Landry; Marlene T Kim; Naomi L Kruhlak; Kevin P Cross; Roustem Saiakhov; Suman Chakravarti; Lidiya Stavitskaya
Journal:  Regul Toxicol Pharmacol       Date:  2019-10-03       Impact factor: 3.271

Review 4.  EURL ECVAM Genotoxicity and Carcinogenicity Database of Substances Eliciting Negative Results in the Ames Test: Construction of the Database.

Authors:  Federica Madia; David Kirkland; Takeshi Morita; Paul White; David Asturiol; Raffaella Corvi
Journal:  Mutat Res       Date:  2020-05-21       Impact factor: 2.433

5.  Skin Doctor CP: Conformal Prediction of the Skin Sensitization Potential of Small Organic Molecules.

Authors:  Anke Wilm; Ulf Norinder; M Isabel Agea; Christina de Bruyn Kops; Conrad Stork; Jochen Kühnl; Johannes Kirchmair
Journal:  Chem Res Toxicol       Date:  2020-12-09       Impact factor: 3.739

6.  Migration of styrene oligomers from food contact materials: in silico prediction of possible genotoxicity.

Authors:  Elisa Beneventi; Christophe Goldbeck; Sebastian Zellmer; Stefan Merkel; Andreas Luch; Thomas Tietz
Journal:  Arch Toxicol       Date:  2022-08-13       Impact factor: 6.168

7.  Use of transcriptomics in hazard identification and next generation risk assessment: A case study with clothianidin.

Authors:  Heike Sprenger; Katrin Kreuzer; Jimmy Alarcan; Kristin Herrmann; Julia Buchmüller; Philip Marx-Stoelting; Albert Braeuning
Journal:  Food Chem Toxicol       Date:  2022-06-08       Impact factor: 5.572

8.  In vivo and in vitro mutagenicity of perillaldehyde and cinnamaldehyde.

Authors:  Masamitsu Honma; Masami Yamada; Manabu Yasui; Katsuyoshi Horibata; Kei-Ichi Sugiyama; Kenichi Masumura
Journal:  Genes Environ       Date:  2021-07-16

9.  Management of pharmaceutical ICH M7 (Q)SAR predictions - The impact of model updates.

Authors:  Catrin Hasselgren; Joel Bercu; Alex Cayley; Kevin Cross; Susanne Glowienke; Naomi Kruhlak; Wolfgang Muster; John Nicolette; M Vijayaraj Reddy; Roustem Saiakhov; Krista Dobo
Journal:  Regul Toxicol Pharmacol       Date:  2020-10-13       Impact factor: 3.271

10.  Development of a new quantitative structure-activity relationship model for predicting Ames mutagenicity of food flavor chemicals using StarDrop™ auto-Modeller™.

Authors:  Toshio Kasamatsu; Airi Kitazawa; Sumie Tajima; Masahiro Kaneko; Kei-Ichi Sugiyama; Masami Yamada; Manabu Yasui; Kenichi Masumura; Katsuyoshi Horibata; Masamitsu Honma
Journal:  Genes Environ       Date:  2021-04-30
  10 in total

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