| Literature DB >> 26783151 |
Tetsuya Okano1, Masahiro Seike1, Hidehiko Kuribayashi1, Chie Soeno1, Takeo Ishii2, Kozui Kida2, Akihiko Gemma1.
Abstract
To date, a number of potential biomarkers for lung squamous cell cancer (SCC) have been identified; however, sensitive biomarkers are currently lacking to detect early stage SCC due to low sensitivity and specificity. In the present study, we compared the 7 serum proteomic profiles of 11 SCC patients, 7 chronic obstructive pulmonary disease (COPD) patients and 7 healthy smokers as controls to identify potential serum biomarkers associated with SCC and COPD. Two-dimensional difference gel electrophoresis (2D-DIGE) and mass-spectrometric analysis (MS) using an affinity column revealed two candidate proteins, haptoglobin (HP) and apolipoprotein 4, as biomarkers of SCC, and α-1-antichymotrypsin as a marker of COPD. The iTRAQ technique was also used to identify SCC-specific peptides. HP protein expression was significantly higher in SCC patients than in COPD patients. Furthermore, two HP protein peptides showed significantly higher serum levels in SCC patients than in COPD patients. We established novel polyclonal antibodies for the two HP peptides and subsequently a sandwich enzyme-linked immunosorbent assay (ELISA) for the quantification of these specific peptides in patient and control sera. The sensitivity of detection by ELISA of one HP peptide (HP216) was 70% of SCC patients, 40% of COPDs patients and 13% of healthy controls. We also measured CYFRA, a cytokeratin fragment clinically used as an SCC tumor marker, in all the 28 cases and found CYFRA was detected in only seven SCC cases. However, when the measurement of HP216 was combined with that of CYFRA, 100% (10 of 10 patients) of SCC cases were detected. Our proteomic profiling demonstrates that the SCC-specific HP peptide HP216 may potentially be used as a diagnostic biomarker for SCC.Entities:
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Year: 2016 PMID: 26783151 PMCID: PMC4750543 DOI: 10.3892/ijo.2016.3330
Source DB: PubMed Journal: Int J Oncol ISSN: 1019-6439 Impact factor: 5.650
Protein expression levels, after iTRAQ analysis, in SCC and COPD cases.
| Accession no. | Protein name | Peptides (95%) | 116:114 | P-value | EF |
|---|---|---|---|---|---|
| IPI00641737.2 | Haptoglobin | 187 | 10.8 | <0.001 | 1.25 |
| IPI00553177.1 | Isoform 1 of α-1-antitrypsin | 15 | 5.4 | <0.001 | 1.45 |
| IPI00022429.3 | α-1-acid glycoprotein 1 | 164 | 3.2 | <0.001 | 1.56 |
| IPI00027462.1 | Protein S100-A9 | 6 | 3.1 | 0.002 | 1.50 |
| IPI00022417.4 | Leucine-rich α-2-glycoprotein | 56 | 2.9 | <0.001 | 1.20 |
| IPI00876950.1 | Isoform 2 of inter-α-trypsin inhibitor heavy chain H3 | 51 | 2.9 | <0.001 | 1.18 |
| IPI00478003.3 | α-2-macroglobulin | 825 | 2.7 | <0.001 | 1.14 |
| IPI01009486.1 | Uncharacterized protein | 11 | 2.5 | <0.001 | 1.33 |
| IPI00022395.1 | Complement component C9 | 34 | 2.4 | <0.001 | 1.32 |
| IPI00896380.1 | Isoform 2 of Ig mu chain C region | 14 | 2.3 | <0.001 | 1.15 |
| IPI01025667.1 | α-1-antitrypsin | 141 | 2.3 | <0.001 | 1.24 |
| IPI00296608.6 | Complement component C7 | 34 | 2.0 | <0.001 | 1.32 |
| IPI00064667.5 | β-Ala-His dipeptidase | 20 | 0.5 | <0.001 | 1.16 |
| IPI00339228.2 | Fibronectin | 126 | 0.4 | <0.001 | 1.23 |
| IPI00657670.1 | Apolipoprotein C-III variant 1 | 40 | 0.4 | 0.006 | 1.59 |
| IPI00216065.3 | Isoform 2 of Vitamin K-dependent protein Z | 2 | 0.4 | 0.004 | 1.45 |
Figure 1Statistical analysis of 25 serum samples as a function of their protein expression. Profiles (A) A representative 2-D image of a Cy5-labeled proteins of SCC patients. Spots with increased intensity on SCC patients are marked by red circles. Spots with increased intensity on COPD patients are marked by blue circles. Spot numbers correspond to those in Table I. (B) A three-dimensional plot of the results of principal component analysis (PCA) using 2520 unselected spots in the first and second sets of collected serum samples. (C) Hierarchical clustering analysis of the 10 selected protein spots showing a significant difference between SCC and COPD cases in both sets. SCC and COPD cases are clearly divided into groups according to their organ of origin. Protein names are listed on the right. (D and E) Western blot analyses for the validation of alterations. Serum protein samples were separated by SDS-PAGE and western blots incubated with antibodies against haptoglobin, apolipoprotein IV (APO4), α-1-anti-chymotrypsin, and fibronectin. Fibronectin was used as a loading control.
The differentially expressed proteins in SCC and COPD.
| 1st set | 2nd set | |||||
|---|---|---|---|---|---|---|
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| |||||
| Spot no. | Protein ID | Protein name | Ratio | P-value | Ratio | P-value |
| SCC vs. COPD | ||||||
| 1289 | gi|306882 | Haptoglobin precursor | 10.4 | 2.6E-06 | 4.2 | 0.008 |
| 1325 | gi|306882 | Haptoglobin precursor | 4.9 | 9.1E-06 | 8.1 | 0.009 |
| 1341 | gi|306882 | Haptoglobin precursor | 4.0 | 0.000053 | 8.7 | 0.003 |
| 1307 | gi|178759 | Apolipoprotein A-IV | 10.4 | 1.8E-06 | 6.7 | 0.005 |
| 1313 | gi|71773110 | Apolipoprotein A-IV precursor | 5.9 | 0.000042 | 9.6 | 0.005 |
| 1991 | gi|78101268 | Complement component C3 | 5.2 | 0.000032 | 2.8 | 0.006 |
| 1897 | gi|337758 | Pre-serum amyloid P component | 8.7 | 0.000018 | 3.4 | 0.007 |
| 1920 | gi|28317 | Unnamed protein product | 5.7 | 0.000011 | 1.7 | 0.04 |
| 1925 | gi|7959223 | KIAA1481 protein | 12.0 | 2.1E-07 | 3.8 | 0.02 |
| 1934 | gi|11935049 | Keratin 1 | 9.2 | 1.4E-06 | 2.8 | 0.006 |
| COPD vs. smoker | ||||||
| 1963 | gi|7331218 | Keratin 1 | 4.7 | 7.5E-008 | 1.2 | 0.04 |
| 804 | gi|177809 | α-1-antichymotrypsin | −5.7 | 8.2E-006 | −1.7 | 0.04 |
| 846 | gi|177809 | α-1-antichymotrypsin | −4.7 | 1.2E-006 | −2.7 | 0.001 |
| 792 | gi|177809 | α-1-antichymotrypsin | −3.9 | 1.3E-006 | −1.8 | 0.04 |
Figure 2HP protein sequence. (A) Aligned HP 406 amino acid sequences. Two significantly overexpressed peptides were detected by iTRAQ and sequences are shown in red font. The two peptides are located in the N-terminal region of the β-chain of the HP phenotype (HP 1-1). (B and C) Representative MS/MS spectra showing the peptides of the HP protein. The MS/MS spectra show the identified peptide sequences, TEGDGVYTLNDKK or DIAPTLTLYVGKK, leading to the identification of HP.
Figure 3HP peptide ELISA. (A) A ROC curve and AUC values showing the discriminating capacities of HP216. (B) HP216 peptide expression by ELISA. HP216 peptide levels were significantly higher in sera from SCC patients than in healthy smokers. A Mann-Whitney test showed a significant statistical difference between the SCC (n=10) compared to the healthy controls group (n=8). ※P<0.05
Detection rates for CYFRA and HP216, and their combination.
| No. of cases | CYFRA n, (%) | HP216 n, (%) | Combination n, (%) | |
|---|---|---|---|---|
| SCC | 10 | 7 (70) | 7 (70) | 10 (100) |
| COPD | 10 | 0 (0) | 4 (40) | |
| Smoker | 8 | 0 (0) | 1 (13) |
The results of CYFRA and HP 216, and their combination.
| No. | Case | CYFRA | HP216 | Combination | ||
|---|---|---|---|---|---|---|
| 1 | SCC | 14.8 | + | 0.14 | + | + |
| 2 | SCC | 14.4 | + | 0.16 | + | + |
| 3 | SCC | 10.9 | + | 0.14 | + | + |
| 4 | SCC | 9.1 | + | 0.18 | + | + |
| 5 | SCC | 70.1 | + | 0.11 | − | + |
| 6 | SCC | 39.6 | + | 0.09 | − | + |
| 7 | SCC | 6.1 | + | 0.11 | − | + |
| 8 | SCC | 2.3 | − | 0.43 | + | + |
| 9 | SCC | 2.0 | − | 0.16 | + | + |
| 10 | SCC | 1.8 | − | 0.27 | + | + |