Literature DB >> 26781514

A Systematic Strategy for Screening and Application of Specific Biomarkers in Hepatotoxicity Using Metabolomics Combined With ROC Curves and SVMs.

Yubo Li1, Lei Wang1, Liang Ju1, Haoyue Deng1, Zhenzhu Zhang1, Zhiguo Hou1, Jiabin Xie1, Yuming Wang1, Yanjun Zhang2.   

Abstract

Current studies that evaluate toxicity based on metabolomics have primarily focused on the screening of biomarkers while largely neglecting further verification and biomarker applications. For this reason, we used drug-induced hepatotoxicity as an example to establish a systematic strategy for screening specific biomarkers and applied these biomarkers to evaluate whether the drugs have potential hepatotoxicity toxicity. Carbon tetrachloride (5 ml/kg), acetaminophen (1500 mg/kg), and atorvastatin (5 mg/kg) are established as rat hepatotoxicity models. Fifteen common biomarkers were screened by multivariate statistical analysis and integration analysis-based metabolomics data. The receiver operating characteristic curve was used to evaluate the sensitivity and specificity of the biomarkers. We obtained 10 specific biomarker candidates with an area under the curve greater than 0.7. Then, a support vector machine model was established by extracting specific biomarker candidate data from the hepatotoxic drugs and nonhepatotoxic drugs; the accuracy of the model was 94.90% (92.86% sensitivity and 92.59% specificity) and the results demonstrated that those ten biomarkers are specific. 6 drugs were used to predict the hepatotoxicity by the support vector machines model; the prediction results were consistent with the biochemical and histopathological results, demonstrating that the model was reliable. Thus, this support vector machine model can be applied to discriminate the between the hepatic or nonhepatic toxicity of drugs. This approach not only presents a new strategy for screening-specific biomarkers with greater diagnostic significance but also provides a new evaluation pattern for hepatotoxicity, and it will be a highly useful tool in toxicity estimation and disease diagnoses.
© The Author 2016. Published by Oxford University Press on behalf of the Society of Toxicology. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

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Keywords:  ROC curves; hepatotoxicity; metabolomics; specific biomarkers; support vector machines

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Year:  2016        PMID: 26781514     DOI: 10.1093/toxsci/kfw001

Source DB:  PubMed          Journal:  Toxicol Sci        ISSN: 1096-0929            Impact factor:   4.849


  8 in total

1.  Plasma metabolic profiling analysis of Strychnos nux-vomica Linn. and Tripterygium wilfordii Hook F-induced renal toxicity using metabolomics coupled with UPLC/Q-TOF-MS.

Authors:  Houmin Luo; Caiyun Gu; Chuanxin Liu; Yuming Wang; Hao Wang; Yubo Li
Journal:  Toxicol Res (Camb)       Date:  2018-07-25       Impact factor: 3.524

2.  Plasma metabolic profiling analysis of neurotoxicity induced by oxaliplatin using metabonomics and multivariate data analysis.

Authors:  Yanyan Xu; Yiwei Zhao; Xuejun Guo; Yubo Li; Yanjun Zhang
Journal:  Toxicol Res (Camb)       Date:  2018-04-27       Impact factor: 3.524

3.  Study on Hepatotoxicity of Rhubarb Based on Metabolomics and Network Pharmacology.

Authors:  Shanze Li; Yuming Wang; Chunyan Li; Na Yang; Hongxin Yu; Wenjie Zhou; Siyu Chen; Shenshen Yang; Yubo Li
Journal:  Drug Des Devel Ther       Date:  2021-05-04       Impact factor: 4.162

Review 4.  Biomarkers in DILI: One More Step Forward.

Authors:  Mercedes Robles-Díaz; Inmaculada Medina-Caliz; Camilla Stephens; Raúl J Andrade; M Isabel Lucena
Journal:  Front Pharmacol       Date:  2016-08-22       Impact factor: 5.810

5.  The Evaluation of Toxicity Induced by Psoraleae Fructus in Rats Using Untargeted Metabonomic Method Based on UPLC-Q-TOF/MS.

Authors:  Yanyan Xu; Yiwei Zhao; Jiabin Xie; Xue Sheng; Yubo Li; Yanjun Zhang
Journal:  Evid Based Complement Alternat Med       Date:  2017-11-27       Impact factor: 2.629

6.  Tremorgenic effects and functional metabolomics analysis of lolitrem B and its biosynthetic intermediates.

Authors:  Priyanka Reddy; Simone Rochfort; Elizabeth Read; Myrna Deseo; Emily Jaehne; Maarten Van Den Buuse; Kathryn Guthridge; Martin Combs; German Spangenberg; Jane Quinn
Journal:  Sci Rep       Date:  2019-06-27       Impact factor: 4.379

7.  Effects of ergotamine on the central nervous system using untargeted metabolomics analysis in a mouse model.

Authors:  Priyanka Reddy; Delphine Vincent; Joanne Hemsworth; Vilnis Ezernieks; Kathryn Guthridge; German C Spangenberg; Simone J Rochfort
Journal:  Sci Rep       Date:  2021-10-01       Impact factor: 4.996

Review 8.  Rodent models and metabolomics in non-alcoholic fatty liver disease: What can we learn?

Authors:  Maria Martin-Grau; Vannina G Marrachelli; Daniel Monleon
Journal:  World J Hepatol       Date:  2022-02-27
  8 in total

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