Literature DB >> 26781081

Role of transposable elements in genomic rearrangement, evolution, gene regulation and epigenetics in primates.

Hee-Eun Lee1, Selvam Ayarpadikannan, Heui-Soo Kim.   

Abstract

The Human Genome Project revealed that almost half of the human genome consists of transposable elements (TEs), which are also abundant in non-human primates. Various studies have confirmed the roles of different TE families in primate evolution. TEs such as endogenous retroviruses (ERVs), long terminal repeats (LTRs), long interspersed nuclear elements (LINEs) and short interspersed nuclear elements (SINEs) all have numerous effects on the primate genome, including genomic rearrangement, regulatory functions and epigenetic mechanisms. This review offers an overview of research on TEs, including our current understanding of their presence in modern primate lineages, their evolutionary origins, and their regulatory and modifying effects on primate as well as human genomes. The information provided here should be useful for the study of primate genomics.

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Year:  2016        PMID: 26781081     DOI: 10.1266/ggs.15-00016

Source DB:  PubMed          Journal:  Genes Genet Syst        ISSN: 1341-7568            Impact factor:   1.517


  18 in total

1.  Transposable element-mediated structural variation analysis in dog breeds using whole-genome sequencing.

Authors:  Songmi Kim; Seyoung Mun; Taemook Kim; Kang-Hoon Lee; Keunsoo Kang; Je-Yoel Cho; Kyudong Han
Journal:  Mamm Genome       Date:  2019-08-15       Impact factor: 2.957

2.  DNA Hypermethylation and a Specific Methylation Spectrum on the X Chromosome in Turner Syndrome as Determined by Nanopore Sequencing.

Authors:  Xin Fan; Beibei Zhang; Lijun Fan; Jiajia Chen; Chang Su; Bingyan Cao; Liya Wei; Miao Qin; Chunxiu Gong
Journal:  J Pers Med       Date:  2022-05-26

3.  Integrating transposable elements in the 3D genome.

Authors:  Alexandros Bousios; Hans-Wilhelm Nützmann; Dorothy Buck; Davide Michieletto
Journal:  Mob DNA       Date:  2020-02-04

Review 4.  Epigenetic influences of mobile genetic elements on ciliate genome architecture and evolution.

Authors:  Caitlin M Timmons; Shahed U A Shazib; Laura A Katz
Journal:  J Eukaryot Microbiol       Date:  2022-02-19       Impact factor: 3.880

5.  Deleting the mouse Hsd17b1 gene results in a hypomorphic Naglu allele and a phenotype mimicking a lysosomal storage disease.

Authors:  Heli Jokela; Janne Hakkarainen; Laura Kätkänaho; Pirjo Pakarinen; Suvi T Ruohonen; Manuel Tena-Sempere; Fu-Ping Zhang; Matti Poutanen
Journal:  Sci Rep       Date:  2017-11-27       Impact factor: 4.379

6.  Complex Analysis of Retroposed Genes' Contribution to Human Genome, Proteome and Transcriptome.

Authors:  Magdalena Regina Kubiak; Michał Wojciech Szcześniak; Izabela Makałowska
Journal:  Genes (Basel)       Date:  2020-05-12       Impact factor: 4.096

Review 7.  Long Non-Coding RNAs in Neuronal Aging.

Authors:  Diana Pereira Fernandes; Mainá Bitar; Frank M J Jacobs; Guy Barry
Journal:  Noncoding RNA       Date:  2018-04-18

8.  A 105 kb interstitial insertion in the Xq27.1 palindrome from pseudoautosomal region PAR1 causes a novel X-linked recessive compound phenotype.

Authors:  Nuo Si; Xiaolu Meng; Zhen Zhao; Weibo Xia; Xue Zhang
Journal:  J Transl Med       Date:  2019-04-29       Impact factor: 5.531

9.  Evidence of extensive non-allelic gene conversion among LTR elements in the human genome.

Authors:  Beniamino Trombetta; Gloria Fantini; Eugenia D'Atanasio; Daniele Sellitto; Fulvio Cruciani
Journal:  Sci Rep       Date:  2016-06-27       Impact factor: 4.379

10.  Suppression of Transposable Elements in Leukemic Stem Cells.

Authors:  Anthony R Colombo; Asif Zubair; Devi Thiagarajan; Sergey Nuzhdin; Timothy J Triche; Giridharan Ramsingh
Journal:  Sci Rep       Date:  2017-08-01       Impact factor: 4.379

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