Literature DB >> 26776474

New Methods To Unravel Rhizosphere Processes.

Eva Oburger1, Hannes Schmidt2.   

Abstract

Root-triggered processes (growth, uptake and release of solutes) vary in space and time, and interact with heterogeneous soil microenvironments that provide habitats for (micro)biota on various scales. Despite tremendous progress in method development in the past decades, finding a suitable experimental set-up to investigate processes occurring at the dynamic conjunction of biosphere, hydrosphere, and pedosphere in the close vicinity of active plant roots still represents a major challenge. We discuss recent methodological developments in rhizosphere research with a focus on imaging techniques. We further review established concepts that have been updated with novel techniques, highlighting the need for combinatorial approaches to disentangle rhizosphere processes on relevant scales.
Copyright © 2015 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  imaging techniques; in situ visualization; isotope tracing; plant–soil interface; root exudates; sequencing

Mesh:

Year:  2016        PMID: 26776474     DOI: 10.1016/j.tplants.2015.12.005

Source DB:  PubMed          Journal:  Trends Plant Sci        ISSN: 1360-1385            Impact factor:   18.313


  22 in total

Review 1.  Emergent Properties of Microbial Activity in Heterogeneous Soil Microenvironments: Different Research Approaches Are Slowly Converging, Yet Major Challenges Remain.

Authors:  Philippe C Baveye; Wilfred Otten; Alexandra Kravchenko; María Balseiro-Romero; Éléonore Beckers; Maha Chalhoub; Christophe Darnault; Thilo Eickhorst; Patricia Garnier; Simona Hapca; Serkan Kiranyaz; Olivier Monga; Carsten W Mueller; Naoise Nunan; Valérie Pot; Steffen Schlüter; Hannes Schmidt; Hans-Jörg Vogel
Journal:  Front Microbiol       Date:  2018-08-27       Impact factor: 5.640

2.  Rhizosphere microbiome mediates systemic root metabolite exudation by root-to-root signaling.

Authors:  Elisa Korenblum; Yonghui Dong; Jedrzej Szymanski; Sayantan Panda; Adam Jozwiak; Hassan Massalha; Sagit Meir; Ilana Rogachev; Asaph Aharoni
Journal:  Proc Natl Acad Sci U S A       Date:  2020-02-03       Impact factor: 11.205

Review 3.  A starting guide to root ecology: strengthening ecological concepts and standardising root classification, sampling, processing and trait measurements.

Authors:  Grégoire T Freschet; Loïc Pagès; Colleen M Iversen; Louise H Comas; Boris Rewald; Catherine Roumet; Jitka Klimešová; Marcin Zadworny; Hendrik Poorter; Johannes A Postma; Thomas S Adams; Agnieszka Bagniewska-Zadworna; A Glyn Bengough; Elison B Blancaflor; Ivano Brunner; Johannes H C Cornelissen; Eric Garnier; Arthur Gessler; Sarah E Hobbie; Ina C Meier; Liesje Mommer; Catherine Picon-Cochard; Laura Rose; Peter Ryser; Michael Scherer-Lorenzen; Nadejda A Soudzilovskaia; Alexia Stokes; Tao Sun; Oscar J Valverde-Barrantes; Monique Weemstra; Alexandra Weigelt; Nina Wurzburger; Larry M York; Sarah A Batterman; Moemy Gomes de Moraes; Štěpán Janeček; Hans Lambers; Verity Salmon; Nishanth Tharayil; M Luke McCormack
Journal:  New Phytol       Date:  2021-11       Impact factor: 10.323

4.  Bacterial Biosensors for in Vivo Spatiotemporal Mapping of Root Secretion.

Authors:  Francesco Pini; Alison K East; Corinne Appia-Ayme; Jakub Tomek; Ramakrishnan Karunakaran; Marcela Mendoza-Suárez; Anne Edwards; Jason J Terpolilli; Joshua Roworth; J Allan Downie; Philip S Poole
Journal:  Plant Physiol       Date:  2017-05-11       Impact factor: 8.340

Review 5.  Effects of Secondary Plant Metabolites on Microbial Populations: Changes in Community Structure and Metabolic Activity in Contaminated Environments.

Authors:  Lucie Musilova; Jakub Ridl; Marketa Polivkova; Tomas Macek; Ondrej Uhlik
Journal:  Int J Mol Sci       Date:  2016-07-29       Impact factor: 5.923

6.  Microbiome Selection Could Spur Next-Generation Plant Breeding Strategies.

Authors:  Murali Gopal; Alka Gupta
Journal:  Front Microbiol       Date:  2016-12-07       Impact factor: 5.640

7.  Metabolite profiling of non-sterile rhizosphere soil.

Authors:  Pierre Pétriacq; Alex Williams; Anne Cotton; Alexander E McFarlane; Stephen A Rolfe; Jurriaan Ton
Journal:  Plant J       Date:  2017-08-31       Impact factor: 6.417

8.  A Low-Cost Imaging Method for the Temporal and Spatial Colorimetric Detection of Free Amines on Maize Root Surfaces.

Authors:  Truc H Doan; Tu A Doan; Michael J Kangas; AdreAnna E Ernest; Danny Tran; Christina L Wilson; Andrea E Holmes; Erin L Doyle; Tessa L Durham Brooks
Journal:  Front Plant Sci       Date:  2017-08-30       Impact factor: 5.753

9.  Identification of microRNA-like RNAs from Trichoderma asperellum DQ-1 during its interaction with tomato roots using bioinformatic analysis and high-throughput sequencing.

Authors:  Weiwei Wang; Fengtao Zhang; Jia Cui; Di Chen; Zhen Liu; Jumei Hou; Rongyi Zhang; Tong Liu
Journal:  PLoS One       Date:  2021-07-22       Impact factor: 3.240

10.  An In Vitro Method for Studying the Three-Way Interaction between Soybean, Rhizophagus irregularis and the Soil-Borne Pathogen Fusarium virguliforme.

Authors:  María L Giachero; Nathalie Marquez; Adrien Gallou; Celina M Luna; Stéphane Declerck; Daniel A Ducasse
Journal:  Front Plant Sci       Date:  2017-06-16       Impact factor: 5.753

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