Literature DB >> 26773388

A new perspective on microbial landscapes within food production.

Nicholas A Bokulich1, Zachery T Lewis2, Kyria Boundy-Mills3, David A Mills4.   

Abstract

High-throughput, 'next-generation' sequencing tools offer many exciting new possibilities for food research. From investigating microbial dynamics within food fermentations to the ecosystem of the food-processing built environment, amplicon sequencing, metagenomics, and transcriptomics present novel applications for exploring microbial communities in, on, and around our foods. This review discusses the many uses of these tools for food-related and food facility-related research and highlights where they may yield nuanced insight into the microbial world of food production systems.
Copyright © 2016. Published by Elsevier Ltd.

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Year:  2016        PMID： 26773388      PMCID： PMC4913695          DOI： 10.1016/j.copbio.2015.12.008

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN： 0958-1669            Impact factor:   9.740


  64 in total

1.  Facility-specific "house" microbiome drives microbial landscapes of artisan cheesemaking plants.

Authors:  Nicholas A Bokulich; David A Mills
Journal:  Appl Environ Microbiol       Date:  2013-06-21       Impact factor: 4.792

2.  Bacterial and fungal diversity in the traditional Chinese liquor fermentation process.

Authors:  Xiao-Ran Li; En-Bo Ma; Liang-Zhen Yan; Han Meng; Xiao-Wei Du; Sheng-Wan Zhang; Zhe-Xue Quan
Journal:  Int J Food Microbiol       Date:  2011-02-02       Impact factor: 5.277

3.  Analyses of bacterial communities in meju, a Korean traditional fermented soybean bricks, by cultivation-based and pyrosequencing methods.

Authors:  Yi-Seul Kim; Min-Cheol Kim; Soon-Wo Kwon; Soo-Jin Kim; In-Cheol Park; Jong-Ok Ka; Hang-Yeon Weon
Journal:  J Microbiol       Date:  2011-06-30       Impact factor: 3.422

4.  Impact of disinfectant wipes on the risk of Campylobacter jejuni infection during raw chicken preparation in domestic kitchens.

Authors:  G U Lopez; M Kitajima; S P Sherchan; J D Sexton; L Y Sifuentes; C P Gerba; K A Reynolds
Journal:  J Appl Microbiol       Date:  2015-05-29       Impact factor: 3.772

5.  Indigenous bacteria and fungi drive traditional kimoto sake fermentations.

Authors:  Nicholas A Bokulich; Moe Ohta; Morgan Lee; David A Mills
Journal:  Appl Environ Microbiol       Date:  2014-06-27       Impact factor: 4.792

6.  Community dynamics of bacteria in sourdough fermentations as revealed by their metatranscriptome.

Authors:  Stefan Weckx; Roel Van der Meulen; Joke Allemeersch; Geert Huys; Peter Vandamme; Paul Van Hummelen; Luc De Vuyst
Journal:  Appl Environ Microbiol       Date:  2010-06-25       Impact factor: 4.792

7.  Microbial ecology dynamics during rye and wheat sourdough preparation.

Authors:  Danilo Ercolini; Erica Pontonio; Francesca De Filippis; Fabio Minervini; Antonietta La Storia; Marco Gobbetti; Raffaella Di Cagno
Journal:  Appl Environ Microbiol       Date:  2013-10-04       Impact factor: 4.792

8.  Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity.

Authors:  Benjamin E Wolfe; Julie E Button; Marcela Santarelli; Rachel J Dutton
Journal:  Cell       Date:  2014-07-17       Impact factor: 41.582

9.  Regional microbial signatures positively correlate with differential wine phenotypes: evidence for a microbial aspect to terroir.

Authors:  Sarah Knight; Steffen Klaere; Bruno Fedrizzi; Matthew R Goddard
Journal:  Sci Rep       Date:  2015-09-24       Impact factor: 4.379

10.  NaOH-debittering induces changes in bacterial ecology during table olives fermentation.

Authors:  Luca Cocolin; Valentina Alessandria; Cristian Botta; Roberta Gorra; Francesca De Filippis; Danilo Ercolini; Kalliopi Rantsiou
Journal:  PLoS One       Date:  2013-07-31       Impact factor: 3.240
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  13 in total

Review 1.  Uncovering the hidden microbiota in hospital and built environments: New approaches and solutions.

Authors:  Ana P Christoff; Aline Fr Sereia; Camila Hernandes; Luiz Fv de Oliveira
Journal:  Exp Biol Med (Maywood)       Date:  2019-01-07

2.  The spatial variation of soil bacterial community assembly processes affects the accuracy of source tracking in ten major Chinese cities.

Authors:  Teng Yang; Yu Shi; Jun Zhu; Chang Zhao; Jianmei Wang; Zhiyong Liu; Xiao Fu; Xu Liu; Jiangwei Yan; Meiqing Yuan; Haiyan Chu
Journal:  Sci China Life Sci       Date:  2021-01-08       Impact factor: 6.038

Review 3.  The Grapevine and Wine Microbiome: Insights from High-Throughput Amplicon Sequencing.

Authors:  Horatio H Morgan; Maret du Toit; Mathabatha E Setati
Journal:  Front Microbiol       Date:  2017-05-11       Impact factor: 5.640

Review 4.  Sequencing of the Cheese Microbiome and Its Relevance to Industry.

Authors:  Bhagya R Yeluri Jonnala; Paul L H McSweeney; Jeremiah J Sheehan; Paul D Cotter
Journal:  Front Microbiol       Date:  2018-05-23       Impact factor: 5.640

Review 5.  The food-gut axis: lactic acid bacteria and their link to food, the gut microbiome and human health.

Authors:  Francesca De Filippis; Edoardo Pasolli; Danilo Ercolini
Journal:  FEMS Microbiol Rev       Date:  2020-07-01       Impact factor: 16.408

Review 6.  Metagenomic Approaches for Understanding New Concepts in Microbial Science.

Authors:  Luana de Fátima Alves; Cauã Antunes Westmann; Gabriel Lencioni Lovate; Guilherme Marcelino Viana de Siqueira; Tiago Cabral Borelli; María-Eugenia Guazzaroni
Journal:  Int J Genomics       Date:  2018-08-23       Impact factor: 2.326

7.  Characterization of Diversity and Probiotic Efficiency of the Autochthonous Lactic Acid Bacteria in the Fermentation of Selected Raw Fruit and Vegetable Juices.

Authors:  Xinxing Xu; Dongsheng Luo; Yejun Bao; Xiaojun Liao; Jihong Wu
Journal:  Front Microbiol       Date:  2018-10-23       Impact factor: 5.640

8.  The occurrence of Listeria monocytogenes is associated with built environment microbiota in three tree fruit processing facilities.

Authors:  Xiaoqing Tan; Taejung Chung; Yi Chen; Dumitru Macarisin; Luke LaBorde; Jasna Kovac
Journal:  Microbiome       Date:  2019-08-21       Impact factor: 14.650

Review 9.  Precision public health to inhibit the contagion of disease and move toward a future in which microbes spread health.

Authors:  David S Thaler; Michael G Head; Andrew Horsley
Journal:  BMC Infect Dis       Date:  2019-02-06       Impact factor: 3.090

10.  The sources and transmission routes of microbial populations throughout a meat processing facility.

Authors:  Benjamin Zwirzitz; Stefanie U Wetzels; Emmanuel D Dixon; Beatrix Stessl; Andreas Zaiser; Isabel Rabanser; Sarah Thalguter; Beate Pinior; Franz-Ferdinand Roch; Cameron Strachan; Jürgen Zanghellini; Monika Dzieciol; Martin Wagner; Evelyne Selberherr
Journal:  NPJ Biofilms Microbiomes       Date:  2020-07-10       Impact factor: 7.290
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