Literature DB >> 26765348

Principles of analytical validation of next-generation sequencing based mutational analysis for hematologic neoplasms in a CLIA-certified laboratory.

Rashmi Kanagal-Shamanna1, Rajesh R Singh1, Mark J Routbort1, Keyur P Patel1, L Jeffrey Medeiros1, Rajyalakshmi Luthra1.   

Abstract

Targeted therapy based on mutational profiles is the current standard of practice for the management of patients with hematologic malignancies. Next-generation sequencing (NGS)- based analysis has been adopted by clinical laboratories for high-throughput mutational profiling of myeloid and lymphoid neoplasms. The technology is fairly novel and complex, hence both validation and test implementation in a CLIA-certified laboratory differ substantially from traditional sequencing platforms. Recently, organizations such as the American College of Medical Genetics, Centers for Disease Control and Prevention and College of American Pathologists have published principles and guidelines for NGS test development to ensure standardization of testing across institutions. Summarized here are the recommendations from these organizations as they pertain to targeted NGS-based testing of hematologic malignancies ('liquid tumors'), with particular emphasis on myeloid neoplasms.

Entities:  

Keywords:  clinical laboratory; hematologic malignancies; mutation; next-generation sequencing; validation

Mesh:

Substances:

Year:  2016        PMID: 26765348     DOI: 10.1586/14737159.2016.1142374

Source DB:  PubMed          Journal:  Expert Rev Mol Diagn        ISSN: 1473-7159            Impact factor:   5.225


  11 in total

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Journal:  Blood       Date:  2017-02-28       Impact factor: 22.113

Review 2.  Diagnosis and classification of hematologic malignancies on the basis of genetics.

Authors:  Justin Taylor; Wenbin Xiao; Omar Abdel-Wahab
Journal:  Blood       Date:  2017-06-09       Impact factor: 22.113

3.  NPM1 mutations define a specific subgroup of MDS and MDS/MPN patients with favorable outcomes with intensive chemotherapy.

Authors:  Guillermo Montalban-Bravo; Rashmi Kanagal-Shamanna; Koji Sasaki; Keyur Patel; Irene Ganan-Gomez; Elias Jabbour; Tapan Kadia; Farhad Ravandi; Courtney DiNardo; Gautham Borthakur; Koichi Takahashi; Marina Konopleva; Rami S Komrokji; Amy DeZern; Teodora Kuzmanovic; Jaroslaw Maciejewski; Sherry Pierce; Simona Colla; Mikkael A Sekeres; Hagop Kantarjian; Carlos Bueso-Ramos; Guillermo Garcia-Manero
Journal:  Blood Adv       Date:  2019-03-26

4.  Genomic context and TP53 allele frequency define clinical outcomes in TP53-mutated myelodysplastic syndromes.

Authors:  Guillermo Montalban-Bravo; Rashmi Kanagal-Shamanna; Christopher B Benton; Caleb A Class; Kelly S Chien; Koji Sasaki; Kiran Naqvi; Yesid Alvarado; Tapan M Kadia; Farhad Ravandi; Naval Daver; Koichi Takahashi; Elias Jabbour; Gautham Borthakur; Naveen Pemmaraju; Marina Konopleva; Kelly A Soltysiak; Sherry R Pierce; Carlos E Bueso-Ramos; Keyur P Patel; Hagop Kantarjian; Guillermo Garcia-Manero
Journal:  Blood Adv       Date:  2020-02-11

5.  Impact of the number of mutations in survival and response outcomes to hypomethylating agents in patients with myelodysplastic syndromes or myelodysplastic/myeloproliferative neoplasms.

Authors:  Guillermo Montalban-Bravo; Koichi Takahashi; Keyur Patel; Feng Wang; Song Xingzhi; Graciela M Nogueras; Xuelin Huang; Ana Alfonso Pierola; Elias Jabbour; Simona Colla; Irene Gañan-Gomez; Gautham Borthakur; Naval Daver; Zeev Estrov; Tapan Kadia; Naveen Pemmaraju; Farhad Ravandi; Carlos Bueso-Ramos; Ali Chamseddine; Marina Konopleva; Jianhua Zhang; Hagop Kantarjian; Andrew Futreal; Guillermo Garcia-Manero
Journal:  Oncotarget       Date:  2018-01-03

6.  Bone marrow pathologic abnormalities in familial platelet disorder with propensity for myeloid malignancy and germline RUNX1 mutation.

Authors:  Rashmi Kanagal-Shamanna; Sanam Loghavi; Courtney D DiNardo; L Jeffrey Medeiros; Guillermo Garcia-Manero; Elias Jabbour; Mark J Routbort; Rajyalakshmi Luthra; Carlos E Bueso-Ramos; Joseph D Khoury
Journal:  Haematologica       Date:  2017-06-28       Impact factor: 9.941

7.  Clinically Integrated Molecular Diagnostics in Adenoid Cystic Carcinoma.

Authors:  Julia Thierauf; Nisha Ramamurthy; Vickie Y Jo; Hayley Robinson; Ryan P Frazier; Jonathan Gonzalez; Maciej Pacula; Enrique Dominguez Meneses; Vania Nose; Valentina Nardi; Dora Dias-Santagata; Long P Le; Derrick T Lin; William C Faquin; Lori J Wirth; Jochen Hess; A John Iafrate; Jochen K Lennerz
Journal:  Oncologist       Date:  2019-03-29

8.  Identification of Novel Insertions and Deletions in Haematopoietic Stem/Progenitor Cells in de novo Myelodysplastic Syndromes.

Authors:  Manoj Bandara; Hemali Goonasekera; Vajira Dissanayake
Journal:  Int J Mol Cell Med       Date:  2022-01-10

9.  Stem cell architecture drives myelodysplastic syndrome progression and predicts response to venetoclax-based therapy.

Authors:  Irene Ganan-Gomez; Hui Yang; Feiyang Ma; Guillermo Montalban-Bravo; Natthakan Thongon; Valentina Marchica; Guillaume Richard-Carpentier; Kelly Chien; Ganiraju Manyam; Feng Wang; Ana Alfonso; Shuaitong Chen; Caleb Class; Rashmi Kanagal-Shamanna; Justin P Ingram; Yamini Ogoti; Ashley Rose; Sanam Loghavi; Pamela Lockyer; Benedetta Cambo; Muharrem Muftuoglu; Sarah Schneider; Vera Adema; Michael McLellan; John Garza; Matteo Marchesini; Nicola Giuliani; Matteo Pellegrini; Jing Wang; Jason Walker; Ziyi Li; Koichi Takahashi; Joel D Leverson; Carlos Bueso-Ramos; Michael Andreeff; Karen Clise-Dwyer; Guillermo Garcia-Manero; Simona Colla
Journal:  Nat Med       Date:  2022-03-03       Impact factor: 87.241

10.  Incidental identification of inv(16)(p13.1q22)/CBFB-MYH11 variant transcript in a patient with therapy-related acute myeloid leukemia by routine leukemia translocation panel screen: implications for diagnosis and therapy.

Authors:  Andrés E Quesada; Rajyalakshmi Luthra; Elias Jabbour; Keyur P Patel; Joseph D Khoury; Zhenya Tang; Hector Alvarez; Saradhi Mallampati; Guillermo Garcia-Manero; Guillermo Montalban-Bravo; L Jeffrey Medeiros; Rashmi Kanagal-Shamanna
Journal:  Cold Spring Harb Mol Case Stud       Date:  2021-06-11
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