Literature DB >> 26765055

Chromatin structure and gene regulation: a dynamic view of enhancer function.

Diana A Stavreva1, Gordon L Hager1.   

Abstract

Localized chromatin organization is now recognized as an important determinant of cell identity and developmental pathways. Recent studies have demonstrated that these epigenetic states are unexpectedly dynamic and malleable. In this Extra view we will highlight the transient nature of stimulus-induced enhancer accessibility and its importance for transcription regulation. Using glucocorticoid receptor (GR) as a model system we will discuss spatiotemporal relationships between receptor/chromatin interactions, lifetimes of the DNase I hypersensitivity sites (DHSs), long-range interactions, and gene regulation. We propose that differential temporal activation and utilization of distal regulatory elements plays a role in directing divergent stimulus-induced transcriptional programs.

Entities:  

Keywords:  DNase I; chromatin accessibility; enhancers; gene pulsing; glucocorticoid receptor; long-range interactions; transcription; ultradian

Mesh:

Substances:

Year:  2016        PMID: 26765055      PMCID: PMC4915511          DOI: 10.1080/19491034.2015.1107689

Source DB:  PubMed          Journal:  Nucleus        ISSN: 1949-1034            Impact factor:   4.197


  57 in total

1.  The glucocorticoid receptor: rapid exchange with regulatory sites in living cells.

Authors:  J G McNally; W G Müller; D Walker; R Wolford; G L Hager
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Authors:  Stafford L Lightman; Becky L Conway-Campbell
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3.  Latent enhancers activated by stimulation in differentiated cells.

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Journal:  Cell       Date:  2013-01-17       Impact factor: 41.582

4.  A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.

Authors:  Suhas S P Rao; Miriam H Huntley; Neva C Durand; Elena K Stamenova; Ivan D Bochkov; James T Robinson; Adrian L Sanborn; Ido Machol; Arina D Omer; Eric S Lander; Erez Lieberman Aiden
Journal:  Cell       Date:  2014-12-11       Impact factor: 41.582

Review 5.  CRISPR-based technologies: prokaryotic defense weapons repurposed.

Authors:  Rebecca M Terns; Michael P Terns
Journal:  Trends Genet       Date:  2014-02-18       Impact factor: 11.639

6.  Interaction of the glucocorticoid receptor with the chromatin landscape.

Authors:  Sam John; Peter J Sabo; Thomas A Johnson; Myong-Hee Sung; Simon C Biddie; Stafford L Lightman; Ty C Voss; Sean R Davis; Paul S Meltzer; John A Stamatoyannopoulos; Gordon L Hager
Journal:  Mol Cell       Date:  2008-03-14       Impact factor: 17.970

7.  Remodeling of the enhancer landscape during macrophage activation is coupled to enhancer transcription.

Authors:  Minna U Kaikkonen; Nathanael J Spann; Sven Heinz; Casey E Romanoski; Karmel A Allison; Joshua D Stender; Hyun B Chun; David F Tough; Rab K Prinjha; Christopher Benner; Christopher K Glass
Journal:  Mol Cell       Date:  2013-08-08       Impact factor: 17.970

8.  Rapid glucocorticoid receptor exchange at a promoter is coupled to transcription and regulated by chaperones and proteasomes.

Authors:  Diana A Stavreva; Waltraud G Müller; Gordon L Hager; Carolyn L Smith; James G McNally
Journal:  Mol Cell Biol       Date:  2004-04       Impact factor: 4.272

9.  Overlapping chromatin-remodeling systems collaborate genome wide at dynamic chromatin transitions.

Authors:  Stephanie A Morris; Songjoon Baek; Myong-Hee Sung; Sam John; Malgorzata Wiench; Thomas A Johnson; R Louis Schiltz; Gordon L Hager
Journal:  Nat Struct Mol Biol       Date:  2013-12-08       Impact factor: 15.369

Review 10.  Contribution of Topological Domains and Loop Formation to 3D Chromatin Organization.

Authors:  Vuthy Ea; Marie-Odile Baudement; Annick Lesne; Thierry Forné
Journal:  Genes (Basel)       Date:  2015-07-27       Impact factor: 4.096

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  6 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2019-08-09       Impact factor: 11.205

2.  More than meets the dimer: What is the quaternary structure of the glucocorticoid receptor?

Authors:  Diego M Presman; Gordon L Hager
Journal:  Transcription       Date:  2016-10-20

3.  Genomic copy number variation analysis in multiple system atrophy.

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4.  Synergistic gene expression during the acute phase response is characterized by transcription factor assisted loading.

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Journal:  Nat Commun       Date:  2017-11-29       Impact factor: 14.919

5.  Proteomic analysis of proteome and histone post-translational modifications in heat shock protein 90 inhibition-mediated bladder cancer therapeutics.

Authors:  Qingdi Quentin Li; Jian-Jiang Hao; Zheng Zhang; L Spencer Krane; Kai H Hammerich; Thomas Sanford; Jane B Trepel; Len Neckers; Piyush K Agarwal
Journal:  Sci Rep       Date:  2017-03-15       Impact factor: 4.379

6.  SMARCB1 Acts as a Quiescent Gatekeeper for Cell Cycle and Immune Response in Human Cells.

Authors:  Sung Kyung Choi; Myoung Jun Kim; Jueng Soo You
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  6 in total

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