Literature DB >> 26763907

Lysobacter terricola sp. nov., isolated from greenhouse soil.

Soo-Jin Kim1, Jae-Hyung Ahn1, Hang-Yeon Weon1, Seung-Beom Hong1, Soon-Ja Seok1, Jeong-Seon Kim1, Soon-Wo Kwon1.   

Abstract

Strain 5GH22-11T, which was isolated from greenhouse soil in the Yangpyeong region, Gyeonggi province, Republic of Korea, was characterized to be an aerobic, Gram-stain-negative, flagellated, rod-shaped bacterium. It could grow at temperatures from 10 to 33 °C (optimum of 28-30 °C), in the pH range of 6.0-10.0 (optimum of pH 7.0) and without NaCl. 16S rRNA gene sequence analysis showed that strain 5GH18-14T showed the highest sequence similarities with Lysobacter niabensis GH34-4T (98.6 %), Lysobacter yangpyeongensis GH19-3T (98.1 %), 'Lysobacter fragariae' THG-DN8.7 (97.9 %), Lysobacter terrae THG-A13T (97.3 %), 'Lysobacter rhizosphaerae' THG-DN8.3 (97.2 %), 'Lysobacter tyrosinelyticus' THG-DN8.2 (97.2 %) and Lysobacter oryzae YC6269T (97.2 %), revealing less than 95.5 % sequence similarities with all other species with validly published names. Phylogenetic trees also indicated that strain 5GH18-14T formed a compact subcluster with L. niabensis GH34-4T, L. yangpyeongensis GH19-3T, L. terrae THG-A13T and L. oryzae YC6269T within the genus Lysobacter. The predominant quinone of strain 5GH18-14T was Q-8. The polar lipids were phosphatidylethanolamine, diphosphatidylglycerol, phosphatidylglycerol and phosphatidylmonomethylethanolamine in large amounts, and moderate or small amounts of three unknown phospholipids and two unknown aminophospholipids. DNA-DNA hybridization values with closely related species were below 70 %. The DNA G+C content was 65.9 mol%. Based on the phylogenetic, physiological and chemotaxonomic data, it has been demonstrated that strain 5GH18-14T represents a novel species of the genus Lysobacter, for which the name Lysobacter terricola sp. nov. is proposed. The type strain is 5GH18-14T ( = KACC 16954T = JCM 30862T).

Entities:  

Year:  2016        PMID: 26763907     DOI: 10.1099/ijsem.0.000893

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  2 in total

1.  Lysobacter ciconiae sp. nov., and Lysobacter avium sp. nov., isolated from the faeces of an Oriental stork.

Authors:  So-Yeon Lee; Pil Soo Kim; Hojun Sung; Dong-Wook Hyun; Jin-Woo Bae
Journal:  J Microbiol       Date:  2022-03-31       Impact factor: 3.422

2.  Lysobacter spongiae sp. nov., isolated from spongin.

Authors:  Heejae Choi; Wan-Taek Im; Jin-Sook Park
Journal:  J Microbiol       Date:  2018-02-02       Impact factor: 3.422

  2 in total

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