Literature DB >> 26762852

Comparative analyses of the proteins from Mycobacterium tuberculosis and human genomes: Identification of potential tuberculosis drug targets.

Settu Sridhar1, Pallabini Dash2, Kunchur Guruprasad3.   

Abstract

Tuberculosis, one of the major infectious diseases affecting human beings is caused by the bacillus Mycobacterium tuberculosis. Increased resistance to known drugs commonly used for the treatment of tuberculosis has created an urgent need to identify new targets for validation and to develop drugs. In this study, we have used various bioinformatics tools, to compare the protein sequences from twenty-three M. tuberculosis genome strains along with the known human protein sequences, in order to identify the 'conserved' M. tuberculosis proteins absent in human. Further, based on the analysis of protein interaction networks, we selected one-hundred and forty proteins that were predicted as potential M. tuberculosis drug targets and prioritized according to the ranking of 'clusters' of interacting proteins. Comparison of the predicted 140 TB targets with literature indicated that 46 of them were previously reported, thereby increasing the confidence in our predictions of the remaining 94 targets too. The analyses of the structures and functions corresponding to the predicted potential TB drug targets indicated a diverse range of proteins that included ten 'druggable' targets with some of the known drugs.
Copyright © 2016 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Amino acid sequence; Communicable diseases; Computational biology; Humans; Protein interaction maps; Tuberculosis

Mesh:

Substances:

Year:  2016        PMID: 26762852     DOI: 10.1016/j.gene.2015.12.054

Source DB:  PubMed          Journal:  Gene        ISSN: 0378-1119            Impact factor:   3.688


  4 in total

1.  Three-dimensional models of Mycobacterium tuberculosis proteins Rv1555, Rv1554 and their docking analyses with sildenafil, tadalafil, vardenafil drugs, suggest interference with quinol binding likely to affect protein's function.

Authors:  Pallabini Dash; M Bala Divya; Lalitha Guruprasad; Kunchur Guruprasad
Journal:  BMC Struct Biol       Date:  2018-04-18

2.  Reverse vaccinology and subtractive genomics approaches for identifying common therapeutics against Mycobacterium leprae and Mycobacterium lepromatosis.

Authors:  Arun Kumar Jaiswal; Sandeep Tiwari; Syed Babar Jamal; Letícia de Castro Oliveira; Helioswilton Sales-Campos; Leonardo Eurípedes Andrade-Silva; Carlo Jose Freire Oliveira; Preetam Ghosh; Debmalya Barh; Vasco Azevedo; Siomar C Soares; Virmondes Rodrigues Rodrigues; Marcos Vinicius da Silva
Journal:  J Venom Anim Toxins Incl Trop Dis       Date:  2021-04-09

3.  Decoding the similarities and differences among mycobacterial species.

Authors:  Sony Malhotra; Sundeep Chaitanya Vedithi; Tom L Blundell
Journal:  PLoS Negl Trop Dis       Date:  2017-08-30

4.  Comprehensive analysis of protein acetyltransferases of human pathogen Mycobacterium tuberculosis.

Authors:  Longxiang Xie; Wenmin Yang; Xiangyu Fan; Jianping Xie
Journal:  Biosci Rep       Date:  2019-12-20       Impact factor: 3.840

  4 in total

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