Literature DB >> 26762274

Sampling large geographic areas for rare species using environmental DNA: a study of bull trout Salvelinus confluentus occupancy in western Montana.

K S McKelvey1, M K Young1, W L Knotek2, K J Carim3, T M Wilcox3,4, T M Padgett-Stewart5, M K Schwartz3.   

Abstract

This study tested the efficacy of environmental DNA (eDNA) sampling to delineate the distribution of bull trout Salvelinus confluentus in headwater streams in western Montana, U.S.A. Surveys proved fast, reliable and sensitive: 124 samples were collected across five basins by a single crew in c. 8 days. Results were largely consistent with past electrofishing, but, in a basin where S. confluentus were known to be scarce, eDNA samples indicated that S. confluentus were more broadly distributed than previously thought.
© 2016 The Fisheries Society of the British Isles.

Entities:  

Keywords:  distribution; eDNA; genetics; occupancy; quantitative PCR

Mesh：

Substances：

Year:  2016        PMID： 26762274     DOI： 10.1111/jfb.12863

Source DB:  PubMed          Journal:  J Fish Biol        ISSN： 0022-1112            Impact factor:   2.051


  9 in total

1.  Slow climate velocities of mountain streams portend their role as refugia for cold-water biodiversity.

Authors:  Daniel J Isaak; Michael K Young; Charles H Luce; Steven W Hostetler; Seth J Wenger; Erin E Peterson; Jay M Ver Hoef; Matthew C Groce; Dona L Horan; David E Nagel
Journal:  Proc Natl Acad Sci U S A       Date:  2016-04-04       Impact factor: 11.205

2.  Quantitative PCR Assays for Detecting Loach Minnow (Rhinichthys cobitis) and Spikedace (Meda fulgida) in the Southwestern United States.

Authors:  Joseph C Dysthe; Kellie J Carim; Yvette M Paroz; Kevin S McKelvey; Michael K Young; Michael K Schwartz
Journal:  PLoS One       Date:  2016-09-01       Impact factor: 3.240

3.  Environmental DNA assays for the sister taxa sauger (Sander canadensis) and walleye (Sander vitreus).

Authors:  Joseph C Dysthe; Kellie J Carim; Michael Ruggles; Kevin S McKelvey; Michael K Young; Michael K Schwartz
Journal:  PLoS One       Date:  2017-04-25       Impact factor: 3.240

4.  Distribution and seasonal differences in Pacific Lamprey and Lampetra spp eDNA across 18 Puget Sound watersheds.

Authors:  Carl O Ostberg; Dorothy M Chase; Michael C Hayes; Jeffrey J Duda
Journal:  PeerJ       Date:  2018-03-16       Impact factor: 2.984

5.  Repurposing environmental DNA samples-detecting the western pearlshell (Margaritifera falcata) as a proof of concept.

Authors:  Joseph C Dysthe; Torrey Rodgers; Thomas W Franklin; Kellie J Carim; Michael K Young; Kevin S McKelvey; Karen E Mock; Michael K Schwartz
Journal:  Ecol Evol       Date:  2018-02-05       Impact factor: 2.912

6.  An improved environmental DNA assay for bull trout (Salvelinus confluentus) based on the ribosomal internal transcribed spacer I.

Authors:  Joseph C Dysthe; Thomas W Franklin; Kevin S McKelvey; Michael K Young; Michael K Schwartz
Journal:  PLoS One       Date:  2018-11-06       Impact factor: 3.240

Review 7.  Beyond Biodiversity: Can Environmental DNA (eDNA) Cut It as a Population Genetics Tool?

Authors:  Clare I M Adams; Michael Knapp; Neil J Gemmell; Gert-Jan Jeunen; Michael Bunce; Miles D Lamare; Helen R Taylor
Journal:  Genes (Basel)       Date:  2019-03-01       Impact factor: 4.096

8.  Optimizing an eDNA protocol for estuarine environments: Balancing sensitivity, cost and time.

Authors:  Thiago M Sanches; Andrea D Schreier
Journal:  PLoS One       Date:  2020-05-21       Impact factor: 3.240

9.  qPCR detection of Sturgeon chub (Macrhybopsis gelida) DNA in environmental samples.

Authors:  Daniel H Mason; Joseph C Dysthe; Thomas W Franklin; Joseph A Skorupski; Michael K Young; Kevin S McKelvey; Michael K Schwartz
Journal:  PLoS One       Date:  2018-12-31       Impact factor: 3.240
  9 in total

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