Literature DB >> 26759522

Learning interactions via hierarchical group-lasso regularization.

Michael Lim1, Trevor Hastie1.   

Abstract

We introduce a method for learning pairwise interactions in a linear regression or logistic regression model in a manner that satisfies strong hierarchy: whenever an interaction is estimated to be nonzero, both its associated main effects are also included in the model. We motivate our approach by modeling pairwise interactions for categorical variables with arbitrary numbers of levels, and then show how we can accommodate continuous variables as well. Our approach allows us to dispense with explicitly applying constraints on the main effects and interactions for identifiability, which results in interpretable interaction models. We compare our method with existing approaches on both simulated and real data, including a genome-wide association study, all using our R package glinternet.

Entities:  

Keywords:  computer intensive; hierarchical; interaction; logistic; regression

Year:  2015        PMID: 26759522      PMCID: PMC4706754          DOI: 10.1080/10618600.2014.938812

Source DB:  PubMed          Journal:  J Comput Graph Stat        ISSN: 1061-8600            Impact factor:   2.302


  5 in total

Review 1.  Methods for identifying SNP interactions: a review on variations of Logic Regression, Random Forest and Bayesian logistic regression.

Authors:  Carla Chia-Ming Chen; Holger Schwender; Jonathan Keith; Robin Nunkesser; Kerrie Mengersen; Paula Macrossan
Journal:  IEEE/ACM Trans Comput Biol Bioinform       Date:  2011 Nov-Dec       Impact factor: 3.710

2.  Strong rules for discarding predictors in lasso-type problems.

Authors:  Robert Tibshirani; Jacob Bien; Jerome Friedman; Trevor Hastie; Noah Simon; Jonathan Taylor; Ryan J Tibshirani
Journal:  J R Stat Soc Series B Stat Methodol       Date:  2012-03       Impact factor: 4.488

3.  Identification of SNP interactions using logic regression.

Authors:  Holger Schwender; Katja Ickstadt
Journal:  Biostatistics       Date:  2007-06-19       Impact factor: 5.899

4.  A LASSO FOR HIERARCHICAL INTERACTIONS.

Authors:  Jacob Bien; Jonathan Taylor; Robert Tibshirani
Journal:  Ann Stat       Date:  2013-06       Impact factor: 4.028

5.  Genetic Analysis Workshop 15: simulation of a complex genetic model for rheumatoid arthritis in nuclear families including a dense SNP map with linkage disequilibrium between marker loci and trait loci.

Authors:  Michael B Miller; Gregg R Lind; Na Li; Soon-Young Jang
Journal:  BMC Proc       Date:  2007-12-18
  5 in total
  42 in total

1.  Using the EM algorithm for Bayesian variable selection in logistic regression models with related covariates.

Authors:  M D Koslovsky; M D Swartz; L Leon-Novelo; W Chan; A V Wilkinson
Journal:  J Stat Comput Simul       Date:  2017-11-08       Impact factor: 1.424

2.  Recent advances and prospects of computational methods for metabolite identification: a review with emphasis on machine learning approaches.

Authors:  Dai Hai Nguyen; Canh Hao Nguyen; Hiroshi Mamitsuka
Journal:  Brief Bioinform       Date:  2019-11-27       Impact factor: 11.622

3.  Selection of nonlinear interactions by a forward stepwise algorithm: Application to identifying environmental chemical mixtures affecting health outcomes.

Authors:  Naveen N Narisetty; Bhramar Mukherjee; Yin-Hsiu Chen; Richard Gonzalez; John D Meeker
Journal:  Stat Med       Date:  2018-12-26       Impact factor: 2.373

4.  Prediction of hierarchical time series using structured regularization and its application to artificial neural networks.

Authors:  Tomokaze Shiratori; Ken Kobayashi; Yuichi Takano
Journal:  PLoS One       Date:  2020-11-12       Impact factor: 3.240

Review 5.  Statistical Approaches to Address Multi-Pollutant Mixtures and Multiple Exposures: the State of the Science.

Authors:  Massimo Stafoggia; Susanne Breitner; Regina Hampel; Xavier Basagaña
Journal:  Curr Environ Health Rep       Date:  2017-12

6.  Structured detection of interactions with the directed lasso.

Authors:  Hristina Pashova; Michael LeBlanc; Charles Kooperberg
Journal:  Stat Biosci       Date:  2016-11-29

7.  Improving the assessment of measurement invariance: Using regularization to select anchor items and identify differential item functioning.

Authors:  William C M Belzak; Daniel J Bauer
Journal:  Psychol Methods       Date:  2020-01-09

8.  Identifying gene-gene interactions using penalized tensor regression.

Authors:  Mengyun Wu; Jian Huang; Shuangge Ma
Journal:  Stat Med       Date:  2017-10-16       Impact factor: 2.373

9.  Identification of gene-environment interactions with marginal penalization.

Authors:  Sanguo Zhang; Yuan Xue; Qingzhao Zhang; Chenjin Ma; Mengyun Wu; Shuangge Ma
Journal:  Genet Epidemiol       Date:  2019-11-14       Impact factor: 2.135

10.  Generalized Hierarchical Sparse Model for Arbitrary-Order Interactive Antigenic Sites Identification in Flu Virus Data.

Authors:  Lei Han; Yu Zhang; Xiu-Feng Wan; Tong Zhang
Journal:  KDD       Date:  2016-08
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