| Literature DB >> 26759270 |
Shizhi Wang1, Shenshen Wu1, Qingtao Meng1, Xiaobo Li1, Jinchun Zhang2, Rui Chen1, Meilin Wang3,4.
Abstract
FAS rs2234767 (-1377 G>A), rs1800682 (-670 A>G) and FASLG rs763110 (-844 C>T) promoter polymorphisms can influence transcriptional activities of the genes and thus multiple tumors susceptibility. To investigate their association with risk of colorectal cancer (CRC), the three SNPs were genotyped in 878 cases and 884 controls and the results showed that the FAS rs2234767 and rs1800682 were in a high linkage disequilibrium (LD) with each other (D' = 0.994) and jointly contributed to an increased risk of CRC (without vs. with rs2234767 GG/rs1800682 AA genotypes, adjusted OR = 1.30, 95% CI = 1.05 - 1.61). In vivo ChIP assays evaluated the effect of rs2234767 and rs1800682 on recruitment of SP1 and STAT1, respectively, to chromatin. The results showed SP1 interacting specifically with STAT1 recruited to their respective motifs for transcriptional activation. The mutant alleles rs2234767 A and rs1800682 G jointly affected coupled SP1 and STAT1 recruitment to chromatin. The interplay between SP1 and STAT1 was critical for the functional outcome of rs2234767 and rs1800682 in view of their high LD. In conclusion, the FAS rs2234767 and rs1800682 polymorphisms were in high LD with each other, and they jointly contributed to an increased risk of CRC by altering recruitment of SP1/STAT1 complex to the FAS promoter for transcriptional activation.Entities:
Mesh:
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Year: 2016 PMID: 26759270 PMCID: PMC4725756 DOI: 10.1038/srep19229
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Association between FAS rs2234767, rs1800682 and FASLG rs763110 genotypes and risk of CRC.
| SNPs | Genotype | Cases (n = 878) | Controls (n = 884) | Adjusted OR (95% CI) | ||||
|---|---|---|---|---|---|---|---|---|
| n | % | n | % | |||||
| CC | 462 | 53 | 470 | 53 | 0.71 | 1.0 | 1.00 (Ref) | |
| rs763110 | CT | 354 | 40 | 344 | 39 | 1.06 (0.87–1.28) | ||
| TT | 62 | 7 | 70 | 8 | 0.90 (0.62–1.30) | |||
| 0.92 | ||||||||
| T allele | 478 | 27 | 484 | 27 | 0.92 | 1.0 | ||
| GG | 305 | 37 | 385 | 44 | 1.00 (Ref) | |||
| rs2234767 | GA | 407 | 49 | 372 | 43 | |||
| AA | 124 | 15 | 114 | 13 | ||||
| 0.0051 | ||||||||
| A allele | 655 | 39 | 600 | 34 | ||||
| GG | 305 | 36 | 385 | 44 | 1.00 (Ref) | |||
| GA/AA | 531 | 64 | 486 | 56 | ||||
| AA | 301 | 34 | 348 | 40 | 0.060 | 0.18 | 1.00 (Ref) | |
| rs1800682 | AG | 435 | 50 | 392 | 44 | 1.30 (1.06–1.60) | ||
| GG | 142 | 16 | 144 | 16 | 1.16 (0.88–1.53) | |||
| 0.14 | ||||||||
| G allele | 719 | 41 | 680 | 38 | 0.13 | 0.39 | ||
| AA | 301 | 34 | 348 | 39 | 1.00 (Ref) | |||
| AG/GG | 577 | 66 | 536 | 61 | ||||
Bold indicated statistically significant.
aχ2 test for either genotype distributions or allele frequencies between the cases and controls.
bAdjusted for multiple comparisons by Bonferroni correction.
cAdjusted for age, sex, smoking and drinking status in logistic regression model.
Combined genotype frequencies of the FAS polymorphisms among the cases and controls and their association with risk of CRC.
| Combined genotypes | Cases (n = 836) | Controls (n = 871) | Adjusted OR (95% CI) | ||
|---|---|---|---|---|---|
| n (%) | n (%) | ||||
| GG | AA | 287 (34) | 347 (40) | 1.00 (Reference) | |
| GG | AG/GG | 18 (2) | 38 (3.9) | 0.60 (0.33–1.07) | |
| GA/AA | AA | 13 (2) | 1 (0.1) | ||
| GA/AA | AG/GG | 518 (62) | 485 (56) | ||
| Trend test |
Bold indicated statistically significant.
aχ2 test for the combined genotype distributions between the cases and controls.
bAdjusted for age, sex, smoking and drinking status in logistic regression model.
Stratified analysis of the FAS combined genotypes associated with CRC risk by demographic variables.
| Variables | Case/control (n) | Combined genotypes (case/control) | Adjusted OR (95% CI) | ||||
|---|---|---|---|---|---|---|---|
| With rs2234767 GG/rs1800682 AA | Without rs2234767 GG/rs1800682 AA | ||||||
| n | % | n | % | ||||
| Total | 836/871 | 287/347 | 34/40 | 549/524 | 66/60 | ||
| Age (years) | |||||||
| ≤60 | 436/401 | 156/156 | 36/39 | 280/245 | 64/61 | 0.35 | 1.09 (0.82–1.45) |
| >60 | 400/470 | 131/191 | 33/41 | 269/279 | 67/59 | ||
| Sex | |||||||
| Male | 510/507 | 198/207 | 39/41 | 312/300 | 61/59 | 0.51 | 1.08 (0.84–1.39) |
| Female | 326/364 | 89/140 | 27/38 | 237/224 | 73/62 | ||
| Smoking status | |||||||
| Never | 558/602 | 185/244 | 33/40 | 373/358 | 67/60 | ||
| Ever | 278/269 | 102/103 | 37/38 | 176/166 | 63/62 | 0.70 | 1.08 (0.76–1.53) |
| Drinking status | |||||||
| Never | 610/655 | 207/264 | 34/40 | 403/391 | 66/60 | ||
| Ever | 226/216 | 80/83 | 35/38 | 146/133 | 65/62 | 0.51 | 1.16 (0.78–1.72) |
| Family history of cancer | |||||||
| No | 642/786 | 222/323 | 35/41 | 420/463 | 65/59 | ||
| Yes | 194/85 | 65/24 | 34/28 | 129/61 | 66/72 | 0.39 | 0.78 (0.44–1.37) |
Bold indicated statistically significant.
aχ2 test for the combined genotype distributions between the cases and controls.
bAdjusted for age, sex, smoking and drinking status in logistic regression model.
Association between the FAS combined genotypes and progression of CRC.
| Variables | Combined genotypes | Adjusted OR (95% CI) | ||||
|---|---|---|---|---|---|---|
| With rs2234767 GG/rs1800682 AA | Without rs2234767 GG/rs1800682 AA | |||||
| n | % | n | % | |||
| Controls (n = 871) | 347 | 40 | 524 | 60 | 1.00 (reference) | |
| Cases (n = 836) | ||||||
| Tumor grade | ||||||
| Low | 24 | 40 | 36 | 60 | 0.98 | 0.99 (0.58–1.70) |
| Intermediate | 219 | 34 | 427 | 66 | ||
| High | 44 | 34 | 86 | 66 | 0.19 | 1.30 (0.88–1.91) |
| Dukes stage | ||||||
| A + B | 150 | 35 | 275 | 65 | 0.11 | 1.22 (0.96–1.55) |
| C + D | 137 | 33 | 274 | 67 | ||
Bold indicated statistically significant.
aχ2 test for the combined genotype distributions between the cases and controls.
bAdjusted for age, sex, smoking and drinking status in logistic regression model.
Figure 1FAS rs2234767 A and rs1800682 G alleles affect coupled SP1 and STAT1 recruitment to chromatin.
(A) Chromatin immunoprecipitation (ChIP) of the FAS promoter with three different genotypes (rs2234767 GG/rs1800682 AA, rs2234767 GA/rs1800682 AG and rs2234767 AA/rs1800682 GG) using antibody for SP1 and STAT1(single pool generated from triplicate biological samples/manipulation; triplicate measurements/pool; mean ± SE). (B) Sequential ChIP of the FAS promoter containing SP1 motif immunoprecipitated first using antibody for SP1 followed by antibody for STAT1 (upper) or first using antibody for STAT1 followed by antibody for SP1 (lower). (C) Sequential ChIP of the FAS promoter containing STAT1 motif immunoprecipitated first using antibody for SP1 followed by antibody for STAT1 (upper) or first using antibody for STAT1 followed by antibody for SP1 (lower). For all combined genotypes in the figure, left genotype arises from the rs2234767 and right from the rs1800682 polymorphism.