Literature DB >> 26758545

In need of good neighbours: transcription factors require local DNA hypomethylation for target binding.

Ino D Karemaker1, Michiel Vermeulen1.   

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Year:  2016        PMID： 26758545      PMCID： PMC4755117          DOI： 10.15252/embj.201593750

Source DB:  PubMed          Journal:  EMBO J        ISSN： 0261-4189            Impact factor:   11.598


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  11 in total

1.  DNA-binding factors shape the mouse methylome at distal regulatory regions.

Authors:  Michael B Stadler; Rabih Murr; Lukas Burger; Robert Ivanek; Florian Lienert; Anne Schöler; Erik van Nimwegen; Christiane Wirbelauer; Edward J Oakeley; Dimos Gaidatzis; Vijay K Tiwari; Dirk Schübeler
Journal:  Nature       Date:  2011-12-14       Impact factor: 49.962

2.  Identification of genetic elements that autonomously determine DNA methylation states.

Authors:  Florian Lienert; Christiane Wirbelauer; Indrani Som; Ann Dean; Fabio Mohn; Dirk Schübeler
Journal:  Nat Genet       Date:  2011-10-02       Impact factor: 38.330

3.  Targets and dynamics of promoter DNA methylation during early mouse development.

Authors:  Julie Borgel; Sylvain Guibert; Yufeng Li; Hatsune Chiba; Dirk Schübeler; Hiroyuki Sasaki; Thierry Forné; Michael Weber
Journal:  Nat Genet       Date:  2010-11-07       Impact factor: 38.330

4.  Competition between DNA methylation and transcription factors determines binding of NRF1.

Authors:  Silvia Domcke; Anaïs Flore Bardet; Paul Adrian Ginno; Dominik Hartl; Lukas Burger; Dirk Schübeler
Journal:  Nature       Date:  2015-12-16       Impact factor: 49.962

5.  Maintenance of self-renewal ability of mouse embryonic stem cells in the absence of DNA methyltransferases Dnmt1, Dnmt3a and Dnmt3b.

Authors:  Akiko Tsumura; Tomohiro Hayakawa; Yuichi Kumaki; Shin-ichiro Takebayashi; Morito Sakaue; Chisa Matsuoka; Kunitada Shimotohno; Fuyuki Ishikawa; En Li; Hiroki R Ueda; Jun-ichi Nakayama; Masaki Okano
Journal:  Genes Cells       Date:  2006-07       Impact factor: 1.891

Review 6.  Absence of a simple code: how transcription factors read the genome.

Authors:  Matthew Slattery; Tianyin Zhou; Lin Yang; Ana Carolina Dantas Machado; Raluca Gordân; Remo Rohs
Journal:  Trends Biochem Sci       Date:  2014-08-14       Impact factor: 13.807

7.  The ground state of embryonic stem cell self-renewal.

Authors:  Qi-Long Ying; Jason Wray; Jennifer Nichols; Laura Batlle-Morera; Bradley Doble; James Woodgett; Philip Cohen; Austin Smith
Journal:  Nature       Date:  2008-05-22       Impact factor: 49.962

8.  FGF signaling inhibition in ESCs drives rapid genome-wide demethylation to the epigenetic ground state of pluripotency.

Authors:  Gabriella Ficz; Timothy A Hore; Fátima Santos; Heather J Lee; Wendy Dean; Julia Arand; Felix Krueger; David Oxley; Yu-Lee Paul; Jörn Walter; Simon J Cook; Simon Andrews; Miguel R Branco; Wolf Reik
Journal:  Cell Stem Cell       Date:  2013-07-11       Impact factor: 24.633

9.  Discovery of directional and nondirectional pioneer transcription factors by modeling DNase profile magnitude and shape.

Authors:  Richard I Sherwood; Tatsunori Hashimoto; Charles W O'Donnell; Sophia Lewis; Amira A Barkal; John Peter van Hoff; Vivek Karun; Tommi Jaakkola; David K Gifford
Journal:  Nat Biotechnol       Date:  2014-01-19       Impact factor: 54.908

10.  An expansive human regulatory lexicon encoded in transcription factor footprints.

Authors:  Shane Neph; Jeff Vierstra; Andrew B Stergachis; Alex P Reynolds; Eric Haugen; Benjamin Vernot; Robert E Thurman; Sam John; Richard Sandstrom; Audra K Johnson; Matthew T Maurano; Richard Humbert; Eric Rynes; Hao Wang; Shinny Vong; Kristen Lee; Daniel Bates; Morgan Diegel; Vaughn Roach; Douglas Dunn; Jun Neri; Anthony Schafer; R Scott Hansen; Tanya Kutyavin; Erika Giste; Molly Weaver; Theresa Canfield; Peter Sabo; Miaohua Zhang; Gayathri Balasundaram; Rachel Byron; Michael J MacCoss; Joshua M Akey; M A Bender; Mark Groudine; Rajinder Kaul; John A Stamatoyannopoulos
Journal:  Nature       Date:  2012-09-06       Impact factor: 49.962
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