Literature DB >> 26757913

The stacking interactions of bipyridine complexes: the influence of the metal ion type on the strength of interactions.

Dušan N Sredojević1,2, Predrag V Petrović1,2, Goran V Janjić3, Edward N Brothers1, Michael B Hall4, Snežana D Zarić5,6.   

Abstract

The strength of the stacking interactions in the bipy complexes of nickel, palladium, and platinum, [M(CN)2 bipy]2 (M = Ni, Pd, Pt), was calculated using the ωB97xD/def2-TZVP method. The results show that for all considered geometries, interactions are the strongest for platinum, and weakest for nickel complexes, as a result of higher dispersion contributions of platinum over the palladium and nickel complexes. It was also shown that strength of interactions considerably rises with an increase of the stacking overlap area. As a consequence of the favorable electrostatic term, the strength of interactions also rises when metal atom and cyano ligands are involved in the overlap with bipy ligand. The strongest interaction was calculated in the platinum complex, for the geometry that has overlap of metal and cyano ligands with bipy ligand with an energy of -39.80 kcal mol(-1). The energies for similar geometries of palladium and nickel complexes are -34.60 and -32.45 kcal mol(-1). These energies, remarkably, exceed the strength of the stacking interactions between organic aromatic molecules. These results can be of importance in all systems with stacking interactions, from materials to biomolecules.

Entities:  

Keywords:  Bipy complexes; DFT calculations; Interaction energy; Stacking interactions

Year:  2016        PMID: 26757913     DOI: 10.1007/s00894-015-2888-6

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  46 in total

1.  Benchmark Databases for Nonbonded Interactions and Their Use To Test Density Functional Theory.

Authors:  Yan Zhao; Donald G Truhlar
Journal:  J Chem Theory Comput       Date:  2005-05       Impact factor: 6.006

2.  Efficient and Accurate Double-Hybrid-Meta-GGA Density Functionals-Evaluation with the Extended GMTKN30 Database for General Main Group Thermochemistry, Kinetics, and Noncovalent Interactions.

Authors:  Lars Goerigk; Stefan Grimme
Journal:  J Chem Theory Comput       Date:  2010-12-23       Impact factor: 6.006

Review 3.  Nature and magnitude of aromatic stacking of nucleic acid bases.

Authors:  Jirí Sponer; Kevin E Riley; Pavel Hobza
Journal:  Phys Chem Chem Phys       Date:  2008-04-07       Impact factor: 3.676

4.  Investigation of the benzene-dimer potential energy surface: DFT/CCSD(T) correction scheme.

Authors:  Ota Bludský; Miroslav Rubes; Pavel Soldán; Petr Nachtigall
Journal:  J Chem Phys       Date:  2008-03-21       Impact factor: 3.488

5.  Stacking interactions of hydrogen-bridged rings – stronger than the stacking of benzene molecules.

Authors:  Jelena P Blagojević; Snežana D Zarić
Journal:  Chem Commun (Camb)       Date:  2015-08-21       Impact factor: 6.222

6.  Self-assembly of a 15-nickel metallamacrocyclic complex derived from the L-glutamic acid Schiff base ligand.

Authors:  Yude Thio; Shi Wei Toh; Feng Xue; Jagadese J Vittal
Journal:  Dalton Trans       Date:  2014-04-28       Impact factor: 4.390

7.  Synthesis and anticancer activity of cyclopalladated complexes containing 4-hydroxy-acridine.

Authors:  Daniela Pucci; Veronica Albertini; Rossana Bloise; Anna Bellusci; Antonella Cataldi; Carlo V Catapano; Mauro Ghedini; Alessandra Crispini
Journal:  J Inorg Biochem       Date:  2006-05-05       Impact factor: 4.155

Review 8.  Aromatic rings in chemical and biological recognition: energetics and structures.

Authors:  Laura M Salonen; Manuel Ellermann; François Diederich
Journal:  Angew Chem Int Ed Engl       Date:  2011-04-28       Impact factor: 15.336

9.  Influence of N-heteroaromatic π-π stacking on supramolecular assembly and coordination geometry; effect of a single-atom change in the ligand.

Authors:  Hamid Reza Khavasi; Bahareh Mir Mohammad Sadegh
Journal:  Dalton Trans       Date:  2015-03-28       Impact factor: 4.390

10.  The average local ionization energy as a tool for identifying reactive sites on defect-containing model graphene systems.

Authors:  Jane S Murray; Zenaida Peralta-Inga Shields; Pat Lane; Laura Macaveiu; Felipe A Bulat
Journal:  J Mol Model       Date:  2012-11-30       Impact factor: 1.810

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  1 in total

1.  Discovering the stacking landscape of a pyridine-pyridine system.

Authors:  Tomasz Sierański
Journal:  J Mol Model       Date:  2017-11-09       Impact factor: 1.810

  1 in total

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