Literature DB >> 26755729

Structures of Xenopus Embryonic Epidermal Lectin Reveal a Conserved Mechanism of Microbial Glycan Recognition.

Kittikhun Wangkanont1, Darryl A Wesener2, Jack A Vidani2, Laura L Kiessling3, Katrina T Forest4.   

Abstract

Intelectins (X-type lectins), broadly distributed throughout chordates, have been implicated in innate immunity. Xenopus laevis embryonic epidermal lectin (XEEL), an intelectin secreted into environmental water by the X. laevis embryo, is postulated to function as a defense against microbes. XEEL is homologous (64% identical) to human intelectin-1 (hIntL-1), which is also implicated in innate immune defense. We showed previously that hIntL-1 binds microbial glycans bearing exocyclic vicinal diol groups. It is unknown whether XEEL has the same ligand specificity. Also unclear is whether XEEL and hIntL-1 have similar quaternary structures, as XEEL lacks the corresponding cysteine residues in hIntL-1 that stabilize the disulfide-linked trimer. These observations prompted us to further characterize XEEL. We found that hIntL-1 and XEEL have similar structural features. Even without the corresponding intermolecular disulfide bonds present in hIntL-1, the carbohydrate recognition domain of XEEL (XEELCRD) forms a stable trimer in solution. The structure of XEELCRD in complex with d-glycerol-1-phosphate, a residue present in microbe-specific glycans, indicated that the exocyclic vicinal diol coordinates to a protein-bound calcium ion. This ligand-binding mode is conserved between XEEL and hIntL-1. The domain architecture of full-length XEEL is reminiscent of a barbell, with two sets of three glycan-binding sites oriented in opposite directions. This orientation is consistent with our observation that XEEL can promote the agglutination of specific serotypes of Streptococcus pneumoniae. These data support a role for XEEL in innate immunity, and they highlight structural and functional conservation of X-type lectins among chordates.
© 2016 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  X-ray crystallography; bacterial agglutination; carbohydrate-binding protein; galactofuranose; glycerol phosphate; innate immunity; intelectin; lectin; omentin; protein cross-linking

Mesh:

Substances:

Year:  2016        PMID: 26755729      PMCID: PMC4786701          DOI: 10.1074/jbc.M115.709212

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  56 in total

1.  PRODRG: a tool for high-throughput crystallography of protein-ligand complexes.

Authors:  Alexander W Schüttelkopf; Daan M F van Aalten
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-07-21

2.  Characterization and comparative analyses of zebrafish intelectins: highly conserved sequences, diversified structures and functions.

Authors:  Bin Lin; Zhen Cao; Peng Su; Haibo Zhang; Mengzhen Li; Yiqun Lin; Dezhi Zhao; Yang Shen; Chenfeng Jing; Shangwu Chen; Anlong Xu
Journal:  Fish Shellfish Immunol       Date:  2008-12-13       Impact factor: 4.581

3.  Carbohydrate-aromatic interactions.

Authors:  Juan Luis Asensio; Ana Ardá; Francisco Javier Cañada; Jesús Jiménez-Barbero
Journal:  Acc Chem Res       Date:  2012-06-15       Impact factor: 22.384

4.  Isolation, characterization, and extra-embryonic secretion of the Xenopus laevis embryonic epidermal lectin, XEEL.

Authors:  Saburo Nagata
Journal:  Glycobiology       Date:  2004-11-10       Impact factor: 4.313

5.  Potentiometric analysis of UDP-galactopyranose mutase: stabilization of the flavosemiquinone by substrate.

Authors:  Stephen W B Fullerton; Simon Daff; David A R Sanders; W John Ingledew; Chris Whitfield; Stephen K Chapman; James H Naismith
Journal:  Biochemistry       Date:  2003-02-25       Impact factor: 3.162

6.  Bacterial lipopolysaccharides stimulate production of XCL1, a calcium-dependent lipopolysaccharide-binding serum lectin, in Xenopus laevis.

Authors:  Saburo Nagata; Sayo Nishiyama; Yumi Ikazaki
Journal:  Dev Comp Immunol       Date:  2013-02-27       Impact factor: 3.636

7.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

8.  MolProbity: all-atom structure validation for macromolecular crystallography.

Authors:  Vincent B Chen; W Bryan Arendall; Jeffrey J Headd; Daniel A Keedy; Robert M Immormino; Gary J Kapral; Laura W Murray; Jane S Richardson; David C Richardson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-12-21

9.  A secretory cell type develops alongside multiciliated cells, ionocytes and goblet cells, and provides a protective, anti-infective function in the frog embryonic mucociliary epidermis.

Authors:  Eamon Dubaissi; Karine Rousseau; Robert Lea; Ximena Soto; Siddarth Nardeosingh; Axel Schweickert; Enrique Amaya; David J Thornton; Nancy Papalopulu
Journal:  Development       Date:  2014-03-05       Impact factor: 6.868

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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  13 in total

Review 1.  Recognition of microbial glycans by soluble human lectins.

Authors:  Darryl A Wesener; Amanda Dugan; Laura L Kiessling
Journal:  Curr Opin Struct Biol       Date:  2017-05-05       Impact factor: 6.809

2.  Stereoelectronic Effects Impact Glycan Recognition.

Authors:  Caitlin M McMahon; Christine R Isabella; Ian W Windsor; Paul Kosma; Ronald T Raines; Laura L Kiessling
Journal:  J Am Chem Soc       Date:  2020-01-24       Impact factor: 15.419

3.  Meeting Proceedings, 2017 Cornell University Baker Symposium-Quo Vadis: The Boundless Trajectories of Chemical Biology.

Authors:  Jeremy M Baskin; Yimon Aye
Journal:  Biochemistry       Date:  2017-05-30       Impact factor: 3.162

4.  Structural Stability of Intelectin-1.

Authors:  John J Kozak; Harry B Gray; Roberto A Garza-López
Journal:  J Phys Chem B       Date:  2016-11-11       Impact factor: 2.991

Review 5.  CH-π Interactions in Glycan Recognition.

Authors:  Laura L Kiessling; Roger C Diehl
Journal:  ACS Chem Biol       Date:  2021-10-06       Impact factor: 4.634

6.  Structural features of nucleosomes in interphase and metaphase chromosomes.

Authors:  Yasuhiro Arimura; Rochelle M Shih; Ruby Froom; Hironori Funabiki
Journal:  Mol Cell       Date:  2021-09-02       Impact factor: 17.970

7.  Human intelectin-2 (ITLN2) is selectively expressed by secretory Paneth cells.

Authors:  Eric B Nonnecke; Patricia A Castillo; Malin E V Johansson; Edward J Hollox; Bo Shen; Bo Lönnerdal; Charles L Bevins
Journal:  FASEB J       Date:  2022-03       Impact factor: 5.834

8.  Biochemical and structural characterization of a recombinant fibrinogen-related lectin from Penaeus monodon.

Authors:  Nongnuch Singrang; Sirasit Laophetsakunchai; Bich Ngoc Tran; Paul T Matsudaira; Anchalee Tassanakajon; Kittikhun Wangkanont
Journal:  Sci Rep       Date:  2021-02-03       Impact factor: 4.379

Review 9.  Dismantling the bacterial glycocalyx: Chemical tools to probe, perturb, and image bacterial glycans.

Authors:  Phuong Luong; Danielle H Dube
Journal:  Bioorg Med Chem       Date:  2021-06-07       Impact factor: 3.461

10.  Human intelectin-1 (ITLN1) genetic variation and intestinal expression.

Authors:  Eric B Nonnecke; Patricia A Castillo; Amanda E Dugan; Faisal Almalki; Mark A Underwood; Carol A De La Motte; Weirong Yuan; Wuyuan Lu; Bo Shen; Malin E V Johansson; Laura L Kiessling; Edward J Hollox; Bo Lönnerdal; Charles L Bevins
Journal:  Sci Rep       Date:  2021-06-18       Impact factor: 4.379

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