Literature DB >> 26753674

The effect of transposable elements on phenotypic variation: insights from plants to humans.

Liya Wei1, Xiaofeng Cao2,3.   

Abstract

Transposable elements (TEs), originally discovered in maize as controlling elements, are the main components of most eukaryotic genomes. TEs have been regarded as deleterious genomic parasites due to their ability to undergo massive amplification. However, TEs can regulate gene expression and alter phenotypes. Also, emerging findings demonstrate that TEs can establish and rewire gene regulatory networks by genetic and epigenetic mechanisms. In this review, we summarize the key roles of TEs in fine-tuning the regulation of gene expression leading to phenotypic plasticity in plants and humans, and the implications for adaption and natural selection.

Entities:  

Keywords:  gene expression; phenotypic variation; transposable elements

Mesh:

Substances:

Year:  2016        PMID: 26753674     DOI: 10.1007/s11427-015-4993-2

Source DB:  PubMed          Journal:  Sci China Life Sci        ISSN: 1674-7305            Impact factor:   6.038


  16 in total

1.  Structural organization of fatty acid desaturase loci in linseed lines with contrasting linolenic acid contents.

Authors:  Dinushika Thambugala; Raja Ragupathy; Sylvie Cloutier
Journal:  Funct Integr Genomics       Date:  2016-05-03       Impact factor: 3.410

2.  Dynamic patterns of circular and linear RNAs in maize hybrid and parental lines.

Authors:  Zi Luo; Jia Qian; Sijia Chen; Lin Li
Journal:  Theor Appl Genet       Date:  2019-11-29       Impact factor: 5.699

3.  Circular RNAs exhibit extensive intraspecific variation in maize.

Authors:  Zi Luo; Linqian Han; Jia Qian; Lin Li
Journal:  Planta       Date:  2019-03-23       Impact factor: 4.116

4.  Detection of active transposable elements in Arabidopsis thaliana using Oxford Nanopore Sequencing technology.

Authors:  Emilie Debladis; Christel Llauro; Marie-Christine Carpentier; Marie Mirouze; Olivier Panaud
Journal:  BMC Genomics       Date:  2017-07-17       Impact factor: 3.969

5.  A New Reference Genome Assembly for the Microcrustacean Daphnia pulex.

Authors:  Zhiqiang Ye; Sen Xu; Ken Spitze; Jana Asselman; Xiaoqian Jiang; Matthew S Ackerman; Jacqueline Lopez; Brent Harker; R Taylor Raborn; W Kelley Thomas; Jordan Ramsdell; Michael E Pfrender; Michael Lynch
Journal:  G3 (Bethesda)       Date:  2017-05-05       Impact factor: 3.154

Review 6.  Dynamics of DNA Methylation and Its Functions in Plant Growth and Development.

Authors:  Suresh Kumar; Trilochan Mohapatra
Journal:  Front Plant Sci       Date:  2021-05-21       Impact factor: 5.753

7.  Androgenic-Induced Transposable Elements Dependent Sequence Variation in Barley.

Authors:  Renata Orłowska; Katarzyna A Pachota; Wioletta M Dynkowska; Agnieszka Niedziela; Piotr T Bednarek
Journal:  Int J Mol Sci       Date:  2021-06-24       Impact factor: 5.923

8.  Role of the Mycobacterium marinum ESX-1 Secretion System in Sliding Motility and Biofilm Formation.

Authors:  Li-Yin Lai; Tzu-Lung Lin; Yi-Yin Chen; Pei-Fang Hsieh; Jin-Town Wang
Journal:  Front Microbiol       Date:  2018-05-30       Impact factor: 5.640

9.  Structural and Functional Annotation of Transposable Elements Revealed a Potential Regulation of Genes Involved in Rubber Biosynthesis by TE-Derived siRNA Interference in Hevea brasiliensis.

Authors:  Shuangyang Wu; Romain Guyot; Stéphanie Bocs; Gaëtan Droc; Fetrina Oktavia; Songnian Hu; Chaorong Tang; Pascal Montoro; Julie Leclercq
Journal:  Int J Mol Sci       Date:  2020-06-13       Impact factor: 5.923

10.  Partial maintenance of organ-specific epigenetic marks during plant asexual reproduction leads to heritable phenotypic variation.

Authors:  Anjar Wibowo; Claude Becker; Julius Durr; Jonathan Price; Stijn Spaepen; Sally Hilton; Hadi Putra; Ranjith Papareddy; Quentin Saintain; Sarah Harvey; Gary D Bending; Paul Schulze-Lefert; Detlef Weigel; Jose Gutierrez-Marcos
Journal:  Proc Natl Acad Sci U S A       Date:  2018-09-10       Impact factor: 11.205

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