Literature DB >> 26751170

A biomimetic DNA-based channel for the ligand-controlled transport of charged molecular cargo across a biological membrane.

Jonathan R Burns1, Astrid Seifert2, Niels Fertig2, Stefan Howorka1.   

Abstract

Biological ion channels are molecular gatekeepers that control transport across cell membranes. Recreating the functional principle of such systems and extending it beyond physiological ionic cargo is both scientifically exciting and technologically relevant to sensing or drug release. However, fabricating synthetic channels with a predictable structure remains a significant challenge. Here, we use DNA as a building material to create an atomistically determined molecular valve that can control when and which cargo is transported across a bilayer. The valve, which is made from seven concatenated DNA strands, can bind a specific ligand and, in response, undergo a nanomechanical change to open up the membrane-spanning channel. It is also able to distinguish with high selectivity the transport of small organic molecules that differ by the presence of a positively or negatively charged group. The DNA device could be used for controlled drug release and the building of synthetic cell-like or logic ionic networks.

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Year:  2016        PMID: 26751170     DOI: 10.1038/nnano.2015.279

Source DB:  PubMed          Journal:  Nat Nanotechnol        ISSN: 1748-3387            Impact factor:   39.213


  39 in total

1.  Chemical tags mediate the orthogonal self-assembly of DNA duplexes into supramolecular structures.

Authors:  Nick Mitchell; Andreas Ebner; Peter Hinterdorfer; Robert Tampé; Stefan Howorka
Journal:  Small       Date:  2010-08-16       Impact factor: 13.281

2.  Rapid electronic detection of probe-specific microRNAs using thin nanopore sensors.

Authors:  Meni Wanunu; Tali Dadosh; Vishva Ray; Jingmin Jin; Larry McReynolds; Marija Drndić
Journal:  Nat Nanotechnol       Date:  2010-10-24       Impact factor: 39.213

3.  Folding DNA to create nanoscale shapes and patterns.

Authors:  Paul W K Rothemund
Journal:  Nature       Date:  2006-03-16       Impact factor: 49.962

Review 4.  Nanopore analytics: sensing of single molecules.

Authors:  Stefan Howorka; Zuzanna Siwy
Journal:  Chem Soc Rev       Date:  2009-06-15       Impact factor: 54.564

5.  Stochastic transport through carbon nanotubes in lipid bilayers and live cell membranes.

Authors:  Jia Geng; Kyunghoon Kim; Jianfei Zhang; Artur Escalada; Ramya Tunuguntla; Luis R Comolli; Frances I Allen; Anna V Shnyrova; Kang Rae Cho; Dayannara Munoz; Y Morris Wang; Costas P Grigoropoulos; Caroline M Ajo-Franklin; Vadim A Frolov; Aleksandr Noy
Journal:  Nature       Date:  2014-10-30       Impact factor: 49.962

6.  Cryo-EM structure of a 3D DNA-origami object.

Authors:  Xiao-Chen Bai; Thomas G Martin; Sjors H W Scheres; Hendrik Dietz
Journal:  Proc Natl Acad Sci U S A       Date:  2012-11-19       Impact factor: 11.205

7.  Automated formation of lipid membrane microarrays for ionic single-molecule sensing with protein nanopores.

Authors:  Juan M del Rio Martinez; Ekaterina Zaitseva; Sönke Petersen; Gerhard Baaken; Jan C Behrends
Journal:  Small       Date:  2014-08-13       Impact factor: 13.281

8.  A tissue-like printed material.

Authors:  Gabriel Villar; Alexander D Graham; Hagan Bayley
Journal:  Science       Date:  2013-04-05       Impact factor: 47.728

9.  Detecting the translocation of DNA through a nanopore using graphene nanoribbons.

Authors:  F Traversi; C Raillon; S M Benameur; K Liu; S Khlybov; M Tosun; D Krasnozhon; A Kis; A Radenovic
Journal:  Nat Nanotechnol       Date:  2013-11-17       Impact factor: 39.213

10.  Transport and self-organization across different length scales powered by motor proteins and programmed by DNA.

Authors:  Adam J M Wollman; Carlos Sanchez-Cano; Helen M J Carstairs; Robert A Cross; Andrew J Turberfield
Journal:  Nat Nanotechnol       Date:  2013-11-10       Impact factor: 39.213

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  71 in total

Review 1.  Bioapplications of DNA nanotechnology at the solid-liquid interface.

Authors:  Wenjing Wang; Sha Yu; Shan Huang; Sai Bi; Heyou Han; Jian-Rong Zhang; Yi Lu; Jun-Jie Zhu
Journal:  Chem Soc Rev       Date:  2019-09-16       Impact factor: 54.564

Review 2.  Building membrane nanopores.

Authors:  Stefan Howorka
Journal:  Nat Nanotechnol       Date:  2017-07-06       Impact factor: 39.213

Review 3.  Nanopore Sensing.

Authors:  Wenqing Shi; Alicia K Friedman; Lane A Baker
Journal:  Anal Chem       Date:  2016-11-18       Impact factor: 6.986

4.  DNA nanotechnology: Bringing lipid bilayers into shape.

Authors:  Stefan Howorka
Journal:  Nat Chem       Date:  2017-06-23       Impact factor: 24.427

5.  Structure and electrical properties of DNA nanotubes embedded in lipid bilayer membranes.

Authors:  Himanshu Joshi; Prabal K Maiti
Journal:  Nucleic Acids Res       Date:  2018-03-16       Impact factor: 16.971

6.  Nanotechnology. Lock-and-key PORE-igami.

Authors:  Stéphane Larochelle
Journal:  Nat Methods       Date:  2016-03       Impact factor: 28.547

7.  Facile Assembly/Disassembly of DNA Nanostructures Anchored on Cell-Mimicking Giant Vesicles.

Authors:  Ruizi Peng; Huijing Wang; Yifan Lyu; Liujun Xu; Hui Liu; Hailan Kuai; Qiaoling Liu; Weihong Tan
Journal:  J Am Chem Soc       Date:  2017-08-30       Impact factor: 15.419

8.  Lipid-Oligonucleotide Conjugates for Simple and Efficient Cell Membrane Engineering and Bioanalysis.

Authors:  Bin Zhao; Qian Tian; Yousef Bagheri; Mingxu You
Journal:  Curr Opin Biomed Eng       Date:  2019-12-27

Review 9.  Regional and functional division of functional elements of solid-state nanochannels for enhanced sensitivity and specificity of biosensing in complex matrices.

Authors:  Pengcheng Gao; Dagui Wang; Cheng Che; Qun Ma; Xiaoqing Wu; Yajie Chen; Hongquan Xu; Xinchun Li; Yu Lin; Defang Ding; Xiaoding Lou; Fan Xia
Journal:  Nat Protoc       Date:  2021-07-28       Impact factor: 13.491

10.  Dynamic Interactions between Lipid-Tethered DNA and Phospholipid Membranes.

Authors:  Patrick M Arnott; Himanshu Joshi; Aleksei Aksimentiev; Stefan Howorka
Journal:  Langmuir       Date:  2018-10-10       Impact factor: 3.882

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