Literature DB >> 26748488

Combining classical molecular dynamics and quantum mechanical methods for the description of electronic excitations: The case of carotenoids.

Ingrid G Prandi1, Lucas Viani1,2, Oliviero Andreussi1, Benedetta Mennucci1.   

Abstract

Carotenoids are important actors both in light-harvesting (LH) and in photoprotection functions of photosynthetic pigment-protein complexes. A deep theoretical investigation of this multiple role is still missing owing to the difficulty of describing the delicate interplay between electronic and nuclear degrees of freedom. A possible strategy is to combine accurate quantum mechanical (QM) methods with classical molecular dynamics. To do this, however, accurate force-fields (FF) are necessary. This article presents a new FF for the different carotenoids present in LH complexes of plants. The results show that all the important structural properties described by the new FF are in very good agreement with QM reference values. This increased accuracy in the simulation of the structural fluctuations is also reflected in the description of excited states. Both the energy order and the different nature of the lowest singlet states are preserved during the dynamics when the new FF is used, whereas an unphysical mixing is found when a standard FF is used.
© 2016 Wiley Periodicals, Inc.

Entities:  

Keywords:  carotenoids; electronic excitation; force field; light-harvesting

Mesh:

Substances:

Year:  2016        PMID: 26748488     DOI: 10.1002/jcc.24286

Source DB:  PubMed          Journal:  J Comput Chem        ISSN: 0192-8651            Impact factor:   3.376


  9 in total

1.  The role of charge-transfer states in the spectral tuning of antenna complexes of purple bacteria.

Authors:  Michele Nottoli; Sandro Jurinovich; Lorenzo Cupellini; Alastair T Gardiner; Richard Cogdell; Benedetta Mennucci
Journal:  Photosynth Res       Date:  2018-03-03       Impact factor: 3.573

2.  Quantum chemical elucidation of a sevenfold symmetric bacterial antenna complex.

Authors:  Lorenzo Cupellini; Pu Qian; Tu C Nguyen-Phan; Alastair T Gardiner; Richard J Cogdell
Journal:  Photosynth Res       Date:  2022-06-08       Impact factor: 3.573

Review 3.  A perspective on the major light-harvesting complex dynamics under the effect of pH, salts, and the photoprotective PsbS protein.

Authors:  Eleni Navakoudis; Taxiarchis Stergiannakos; Vangelis Daskalakis
Journal:  Photosynth Res       Date:  2022-07-10       Impact factor: 3.429

Review 4.  Molecular dynamics simulations in photosynthesis.

Authors:  Nicoletta Liguori; Roberta Croce; Siewert J Marrink; Sebastian Thallmair
Journal:  Photosynth Res       Date:  2020-04-15       Impact factor: 3.573

5.  Fine control of chlorophyll-carotenoid interactions defines the functionality of light-harvesting proteins in plants.

Authors:  Vytautas Balevičius; Kieran F Fox; William P Bricker; Sandro Jurinovich; Ingrid G Prandi; Benedetta Mennucci; Christopher D P Duffy
Journal:  Sci Rep       Date:  2017-10-24       Impact factor: 4.379

6.  Quantum Chemical Modeling of the Photoinduced Activity of Multichromophoric Biosystems.

Authors:  Francesco Segatta; Lorenzo Cupellini; Marco Garavelli; Benedetta Mennucci
Journal:  Chem Rev       Date:  2019-07-05       Impact factor: 60.622

Review 7.  Could Quantum Mechanical Properties Be Reflected on Classical Molecular Dynamics? The Case of Halogenated Organic Compounds of Biological Interest.

Authors:  Lucas de Azevedo Santos; Ingrid G Prandi; Teodorico C Ramalho
Journal:  Front Chem       Date:  2019-12-13       Impact factor: 5.221

8.  Structure of the stress-related LHCSR1 complex determined by an integrated computational strategy.

Authors:  Ingrid Guarnetti Prandi; Vladislav Sláma; Cristina Pecorilla; Lorenzo Cupellini; Benedetta Mennucci
Journal:  Commun Biol       Date:  2022-02-17

9.  The molecular mechanisms of light adaption in light-harvesting complexes of purple bacteria revealed by a multiscale modeling.

Authors:  Felipe Cardoso Ramos; Michele Nottoli; Lorenzo Cupellini; Benedetta Mennucci
Journal:  Chem Sci       Date:  2019-09-27       Impact factor: 9.825

  9 in total

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