Literature DB >> 26746217

Exploring stochasticity and imprecise knowledge based on linear inequality constraints.

Sam Subbey1,2, Benjamin Planque3,4, Ulf Lindstrøm4.   

Abstract

This paper explores the stochastic dynamics of a simple foodweb system using a network model that mimics interacting species in a biosystem. It is shown that the system can be described by a set of ordinary differential equations with real-valued uncertain parameters, which satisfy a set of linear inequality constraints. The constraints restrict the solution space to a bounded convex polytope. We present results from numerical experiments to show how the stochasticity and uncertainty characterizing the system can be captured by sampling the interior of the polytope with a prescribed probability rule, using the Hit-and-Run algorithm. The examples illustrate a parsimonious approach to modeling complex biosystems under vague knowledge.

Keywords:  Foodweb; Hit-and-Run; Linear inequality; Polytope; Stochastic

Mesh:

Year:  2016        PMID: 26746217     DOI: 10.1007/s00285-015-0959-z

Source DB:  PubMed          Journal:  J Math Biol        ISSN: 0303-6812            Impact factor:   2.259


  2 in total

1.  Stochastic response surface methods (SRSMs) for uncertainty propagation: application to environmental and biological systems.

Authors:  S S Isukapalli; A Roy; P G Georgopoulos
Journal:  Risk Anal       Date:  1998-06       Impact factor: 4.000

2.  Non-deterministic modelling of food-web dynamics.

Authors:  Benjamin Planque; Ulf Lindstrøm; Sam Subbey
Journal:  PLoS One       Date:  2014-10-09       Impact factor: 3.240

  2 in total

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