Literature DB >> 26739457

Molecular characterization of a distinct bipartite Begomovirus species infecting ivy gourd (Coccinia grandis L.) in Tamil Nadu, India.

K Nagendran1,2, V K Satya3, S Mohankumar4, G Karthikeyan5.   

Abstract

A distinct bipartite begomovirus was found to be associated with the mosaic disease on ivy gourd (Coccinia grandis L.) in Tamil Nadu, India. The complete DNA A and DNA B components were cloned by rolling circle amplification. Genome organization of this virus is found to be typical of Old World bipartite begomovirus. The association of betasatellite component with this virus is absent. The closest nucleotide identity of 73.4 % was seen with the Loofa yellow mosaic virus (LYMV-[VN]-AF509739) suggesting that it is a new virus species Coccinia mosaic virus (CoMoV-Ivy gourd [TN TDV Coc1]) and distantly related to the other known begomoviruses. The DNA B component shared a maximum identity of 55 % with that of Tomato leaf curl New Delhi virus (ToLCNDV). In the phylogenetic analysis, CoMoV-Ivy gourd form cluster separate from other begomoviruses. Recombination analysis showed that there was no recombination event in the genome. This is the distinct begomovirus infecting ivy gourd.

Entities:  

Keywords:  Bipartite begomovirus; Cucurbits virus; Rolling circle amplification; Whitefly

Mesh：

Substances：

Year:  2016        PMID： 26739457     DOI： 10.1007/s11262-015-1278-6

Source DB:  PubMed          Journal:  Virus Genes        ISSN： 0920-8569            Impact factor:   2.332


  14 in total

1.  Diversity of DNA beta, a satellite molecule associated with some monopartite begomoviruses.

Authors:  Rob W Briddon; Simon E Bull; Imran Amin; Ali M Idris; Shahid Mansoor; Ian D Bedford; Poonam Dhawan; Narayan Rishi; Surender S Siwatch; Aly M Abdel-Salam; Judith K Brown; Yusuf Zafar; Peter G Markham
Journal:  Virology       Date:  2003-07-20       Impact factor: 3.616

2.  Coat protein gene replacement results in whitefly transmission of an insect nontransmissible geminivirus isolate.

Authors:  P Höfer; I D Bedford; P G Markham; H Jeske; T Frischmuth
Journal:  Virology       Date:  1997-09-29       Impact factor: 3.616

3.  Biological and molecular characterization of a begomovirus associated with yellow mosaic vein mosaic disease of pumpkin from Northern India.

Authors:  A K Singh; K K Mishra; B Chattopadhyay; S Chakraborty
Journal:  Virus Genes       Date:  2009-08-25       Impact factor: 2.332

4.  Revision of Begomovirus taxonomy based on pairwise sequence comparisons.

Authors:  Judith K Brown; F Murilo Zerbini; Jesús Navas-Castillo; Enrique Moriones; Roberto Ramos-Sobrinho; José C F Silva; Elvira Fiallo-Olivé; Rob W Briddon; Cecilia Hernández-Zepeda; Ali Idris; V G Malathi; Darren P Martin; Rafael Rivera-Bustamante; Shigenori Ueda; Arvind Varsani
Journal:  Arch Virol       Date:  2015-04-18       Impact factor: 2.574

5.  Molecular characterization of distinct bipartite begomovirus infecting bhendi (Abelmoschus esculentus L.) in India.

Authors:  V Venkataravanappa; C N Lakshminarayana Reddy; Salil Jalali; M Krishna Reddy
Journal:  Virus Genes       Date:  2012-03-24       Impact factor: 2.332

6.  Molecular Characterization of Tomato leaf curl Palampur virus and Pepper leaf curl betasatellite Naturally Infecting Pumpkin (Cucurbita moschata) in India.

Authors:  Jaiswal Namrata; R K Saritha; D Datta; M Singh; R S Dubey; A B Rai; M Rai
Journal:  Indian J Virol       Date:  2011-03-16

7.  Distinct evolutionary histories of the DNA-A and DNA-B components of bipartite begomoviruses.

Authors:  Rob W Briddon; Basavaprabhu L Patil; Basavaraj Bagewadi; Muhammad Shah Nawaz-ul-Rehman; Claude M Fauquet
Journal:  BMC Evol Biol       Date:  2010-04-08       Impact factor: 3.260

8.  Complete sequences of tomato leaf curl Palampur virus isolates infecting cucurbits in Iran.

Authors:  Jahangir Heydarnejad; Azadeh Mozaffari; Hossain Massumi; Roya Fazeli; Alistair J A Gray; Sandra Meredith; Francisco Lakay; Dionne N Shepherd; Darren P Martin; Arvind Varsani
Journal:  Arch Virol       Date:  2009-05-08       Impact factor: 2.574

9.  Chlorotic curly stunt: a severe begomovirus disease of bottle gourd in northern India.

Authors:  S S Sohrab; B Mandal; A Ali; A Varma
Journal:  Indian J Virol       Date:  2010-09-03

10.  RDP3: a flexible and fast computer program for analyzing recombination.

Authors:  Darren P Martin; Philippe Lemey; Martin Lott; Vincent Moulton; David Posada; Pierre Lefeuvre
Journal:  Bioinformatics       Date:  2010-08-26       Impact factor: 6.937
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  4 in total

1.  Molecular characterization and phylogenetic analysis of tomato leaf curl Palampur virus, a bipartite begomovirus, associated with Cucumis sativus L. in Pakistan.

Authors:  Muhammad Shafiq; Mukhtar Ahmad; Ayesha Nisar; Muhammad Tariq Manzoor; Arslan Abid; Sehrish Mushtaq; Adeel Riaz; Muhammad Ilyas; Waseem Sarwar; Muhammad Shah Nawaz-Ul-Rehman; Saleem Haider; Ayesha Younus; Muhammad Mubin
Journal:  3 Biotech       Date:  2019-05-07       Impact factor: 2.406

2.  Maintenance of Cotton Leaf Curl Multan Betasatellite by Tomato Leaf Curl New Delhi Virus-Analysis by Mutation.

Authors:  Zafar Iqbal; Muhammad Shafiq; Irfan Ali; Shahid Mansoor; Rob W Briddon
Journal:  Front Plant Sci       Date:  2017-12-22       Impact factor: 5.753

3.  Fangorn Forest (F2): a machine learning approach to classify genes and genera in the family Geminiviridae.

Authors:  José Cleydson F Silva; Thales F M Carvalho; Elizabeth P B Fontes; Fabio R Cerqueira
Journal:  BMC Bioinformatics       Date:  2017-09-30       Impact factor: 3.169

Review 4.  Barcoding of Plant Viruses with Circular Single-Stranded DNA Based on Rolling Circle Amplification.

Authors:  Holger Jeske
Journal:  Viruses       Date:  2018-08-31       Impact factor: 5.048
  4 in total

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