Literature DB >> 26736021

Modeling the Detection of Organic and Inorganic Compounds Using Iodide-Based Chemical Ionization.

Siddharth Iyer1, Felipe Lopez-Hilfiker2, Ben H Lee2, Joel A Thornton2, Theo Kurtén1.   

Abstract

Iodide-based chemical ionization mass spectrometry (CIMS) has been used to detect and measure concentrations of several atmospherically relevant organic and inorganic compounds. The significant electronegativity of iodide and the strong acidity of hydroiodic acid makes electron transfer and proton abstraction essentially negligible, and the soft nature of the adduct formation ionization technique reduces the chances of sample fragmentation. In addition, iodide has a large negative mass defect, which, when combined with the high resolving power of a high resolution time-of-flight chemical ionization mass spectrometer (HR-ToF-CIMS), provides good selectivity. In this work, we use quantum chemical methods to calculate the binding energies, enthalpies and free energies for clusters of an iodide ion with a number of atmospherically relevant organic and inorganic compounds. Systematic configurational sampling of the free molecules and clusters was carried out at the B3LYP/6-31G* level, followed by subsequent calculations at the PBE/SDD and DLPNO-CCSD(T)/def2-QZVPP//PBE/aug-cc-pVTZ-PP levels. The binding energies, enthalpies, and free energies thus obtained were then compared to the iodide-based University of Washington HR-ToF-CIMS (UW-CIMS) instrument sensitivities for these molecules. We observed a reasonably linear relationship between the cluster binding enthalpies and logarithmic instrument sensitivities already at the PBE/SDD level, which indicates that relatively simple quantum chemical methods can predict the sensitivity of an iodide-based CIMS instrument toward most molecules. However, higher level calculations were needed to treat some outlier molecules, most notably oxalic acid and methylerythritol. Our calculations also corroborated the recent experimental findings that the molecules that the UW-CIMS detects at maximum sensitivity usually have binding enthalpies to iodide which are higher than about 26 kcal/mol, depending slightly on the level of theory.

Entities:  

Year:  2016        PMID: 26736021     DOI: 10.1021/acs.jpca.5b09837

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  5 in total

1.  Using advanced mass spectrometry techniques to fully characterize atmospheric organic carbon: current capabilities and remaining gaps.

Authors:  G Isaacman-VanWertz; P Massoli; R E O'Brien; J B Nowak; M R Canagaratna; J T Jayne; D R Worsnop; L Su; D A Knopf; P K Misztal; C Arata; A H Goldstein; J H Kroll
Journal:  Faraday Discuss       Date:  2017-08-24       Impact factor: 4.008

2.  Nitrate radicals and biogenic volatile organic compounds: oxidation, mechanisms, and organic aerosol.

Authors:  Nga Lee Ng; Steven S Brown; Alexander T Archibald; Elliot Atlas; Ronald C Cohen; John N Crowley; Douglas A Day; Neil M Donahue; Juliane L Fry; Hendrik Fuchs; Robert J Griffin; Marcelo I Guzman; Hartmut Herrmann; Alma Hodzic; Yoshiteru Iinuma; José L Jimenez; Astrid Kiendler-Scharr; Ben H Lee; Deborah J Luecken; Jingqiu Mao; Robert McLaren; Anke Mutzel; Hans D Osthoff; Bin Ouyang; Benedicte Picquet-Varrault; Ulrich Platt; Havala O T Pye; Yinon Rudich; Rebecca H Schwantes; Manabu Shiraiwa; Jochen Stutz; Joel A Thornton; Andreas Tilgner; Brent J Williams; Rahul A Zaveri
Journal:  Atmos Chem Phys       Date:  2017       Impact factor: 6.133

3.  Chemical evolution of atmospheric organic carbon over multiple generations of oxidation.

Authors:  Gabriel Isaacman-VanWertz; Paola Massoli; Rachel O'Brien; Christopher Lim; Jonathan P Franklin; Joshua A Moss; James F Hunter; John B Nowak; Manjula R Canagaratna; Pawel K Misztal; Caleb Arata; Joseph R Roscioli; Scott T Herndon; Timothy B Onasch; Andrew T Lambe; John T Jayne; Luping Su; Daniel A Knopf; Allen H Goldstein; Douglas R Worsnop; Jesse H Kroll
Journal:  Nat Chem       Date:  2018-02-26       Impact factor: 24.427

4.  A Four Carbon Organonitrate as a Significant Product of Secondary Isoprene Chemistry.

Authors:  Epameinondas Tsiligiannis; Rongrong Wu; Ben H Lee; Christian Mark Salvador; Michael Priestley; Philip T M Carlsson; Sungah Kang; Anna Novelli; Luc Vereecken; Hendrik Fuchs; Alfred W Mayhew; Jacqueline F Hamilton; Peter M Edwards; Juliane L Fry; Bellamy Brownwood; Steven S Brown; Robert J Wild; Thomas J Bannan; Hugh Coe; James Allan; Jason D Surratt; Asan Bacak; Paul Artaxo; Carl Percival; Song Guo; Min Hu; Tao Wang; Thomas F Mentel; Joel A Thornton; Mattias Hallquist
Journal:  Geophys Res Lett       Date:  2022-05-26       Impact factor: 5.576

5.  Insights into the molecular composition of semi-volatile aerosols in the summertime central Arctic Ocean using FIGAERO-CIMS.

Authors:  Karolina Siegel; Linn Karlsson; Paul Zieger; Andrea Baccarini; Julia Schmale; Michael Lawler; Matthew Salter; Caroline Leck; Annica M L Ekman; Ilona Riipinen; Claudia Mohr
Journal:  Environ Sci Atmos       Date:  2021-03-15
  5 in total

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