Literature DB >> 26733776

Diagnosis of D-Bifunctional Protein Deficiency through Whole-Genome Sequencing: Implications for Cost-Effective Care.

Alina Khromykh1, Benjamin D Solomon2, Dale L Bodian1, Eyby L Leon3, Ramaswamy K Iyer4, Robin L Baker5, David P Ascher6, Rajiv Baveja5, Joseph G Vockley7, John E Niederhuber1.   

Abstract

D-Bifunctional protein deficiency, caused by recessive mutations in HSD17B4, is a severe disorder of peroxisomal fatty acid oxidation. Nonspecific clinical features may contribute to diagnostic challenges. We describe a newborn female with infantile-onset seizures and nonspecific mild dysmorphisms who underwent extensive genetic workup that resulted in the detection of a novel homozygous mutation (c.302+1_4delGTGA) in the HSD17B4 gene, consistent with a diagnosis of D-bifunctional protein deficiency. By comparing the standard clinical workup to diagnostic analysis performed through research-based whole-genome sequencing (WGS), which independently identified the causative mutation, we demonstrated the ability of genomic sequencing to serve as a timely and cost-effective diagnostic tool for the molecular diagnosis of apparent and occult newborn diseases. As genomic sequencing becomes more available and affordable, we anticipate that WGS and related omics technologies will eventually replace the traditional tiered approach to newborn diagnostic workup.

Entities:  

Keywords:  Clinical workup; Cost-effective care; D-Bifunctional protein deficiency; Whole-genome sequencing

Year:  2015        PMID: 26733776      PMCID: PMC4698652          DOI: 10.1159/000433621

Source DB:  PubMed          Journal:  Mol Syndromol        ISSN: 1661-8769


  24 in total

1.  Isaac: ultra-fast whole-genome secondary analysis on Illumina sequencing platforms.

Authors:  Come Raczy; Roman Petrovski; Christopher T Saunders; Ilya Chorny; Semyon Kruglyak; Elliott H Margulies; Han-Yu Chuang; Morten Källberg; Swathi A Kumar; Arnold Liao; Kristina M Little; Michael P Strömberg; Stephen W Tanner
Journal:  Bioinformatics       Date:  2013-06-04       Impact factor: 6.937

2.  Clinical genomic database.

Authors:  Benjamin D Solomon; Anh-Dao Nguyen; Kelly A Bear; Tyra G Wolfsberg
Journal:  Proc Natl Acad Sci U S A       Date:  2013-05-21       Impact factor: 11.205

3.  New approaches to molecular diagnosis.

Authors:  Bruce R Korf; Heidi L Rehm
Journal:  JAMA       Date:  2013-04-10       Impact factor: 56.272

Review 4.  Diagnostic clinical genome and exome sequencing.

Authors:  Leslie G Biesecker; Robert C Green
Journal:  N Engl J Med       Date:  2014-06-19       Impact factor: 91.245

5.  Expanding the phenotypic spectrum in EP300-related Rubinstein-Taybi syndrome.

Authors:  Benjamin D Solomon; Dale L Bodian; Alina Khromykh; Gabriela Gomez Mora; Brendan C Lanpher; Ramaswamy K Iyer; Rajiv Baveja; Joseph G Vockley; John E Niederhuber
Journal:  Am J Med Genet A       Date:  2015-02-25       Impact factor: 2.802

6.  Effectiveness of exome and genome sequencing guided by acuity of illness for diagnosis of neurodevelopmental disorders.

Authors:  Sarah E Soden; Carol J Saunders; Laurel K Willig; Emily G Farrow; Laurie D Smith; Josh E Petrikin; Jean-Baptiste LePichon; Neil A Miller; Isabelle Thiffault; Darrell L Dinwiddie; Greyson Twist; Aaron Noll; Bryce A Heese; Lee Zellmer; Andrea M Atherton; Ahmed T Abdelmoity; Nicole Safina; Sarah S Nyp; Britton Zuccarelli; Ingrid A Larson; Ann Modrcin; Suzanne Herd; Mitchell Creed; Zhaohui Ye; Xuan Yuan; Robert A Brodsky; Stephen F Kingsmore
Journal:  Sci Transl Med       Date:  2014-12-03       Impact factor: 17.956

7.  Rapid whole-genome sequencing for genetic disease diagnosis in neonatal intensive care units.

Authors:  Carol Jean Saunders; Neil Andrew Miller; Sarah Elizabeth Soden; Darrell Lee Dinwiddie; Aaron Noll; Noor Abu Alnadi; Nevene Andraws; Melanie LeAnn Patterson; Lisa Ann Krivohlavek; Joel Fellis; Sean Humphray; Peter Saffrey; Zoya Kingsbury; Jacqueline Claire Weir; Jason Betley; Russell James Grocock; Elliott Harrison Margulies; Emily Gwendolyn Farrow; Michael Artman; Nicole Pauline Safina; Joshua Erin Petrikin; Kevin Peter Hall; Stephen Francis Kingsmore
Journal:  Sci Transl Med       Date:  2012-10-03       Impact factor: 17.956

8.  Clinical diagnosis by whole-genome sequencing of a prenatal sample.

Authors:  Michael E Talkowski; Zehra Ordulu; Vamsee Pillalamarri; Carol B Benson; Ian Blumenthal; Susan Connolly; Carrie Hanscom; Naveed Hussain; Shahrin Pereira; Jonathan Picker; Jill A Rosenfeld; Lisa G Shaffer; Louise E Wilkins-Haug; James F Gusella; Cynthia C Morton
Journal:  N Engl J Med       Date:  2012-12-06       Impact factor: 91.245

9.  An integrated map of genetic variation from 1,092 human genomes.

Authors:  Goncalo R Abecasis; Adam Auton; Lisa D Brooks; Mark A DePristo; Richard M Durbin; Robert E Handsaker; Hyun Min Kang; Gabor T Marth; Gil A McVean
Journal:  Nature       Date:  2012-11-01       Impact factor: 49.962

10.  ClinVar: public archive of relationships among sequence variation and human phenotype.

Authors:  Melissa J Landrum; Jennifer M Lee; George R Riley; Wonhee Jang; Wendy S Rubinstein; Deanna M Church; Donna R Maglott
Journal:  Nucleic Acids Res       Date:  2013-11-14       Impact factor: 16.971

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  4 in total

1.  Genomic analysis of an infant with intractable diarrhea and dilated cardiomyopathy.

Authors:  Dale L Bodian; Thierry Vilboux; Suchitra K Hourigan; Callie L Jenevein; Haresh Mani; Kathleen C Kent; Alina Khromykh; Benjamin D Solomon; Natalie S Hauser
Journal:  Cold Spring Harb Mol Case Stud       Date:  2017-11-21

2.  Leveraging network analytics to infer patient syndrome and identify causal genes in rare disease cases.

Authors:  Andreas Krämer; Sohela Shah; Robert Anthony Rebres; Susan Tang; Daniel Rene Richards
Journal:  BMC Genomics       Date:  2017-08-11       Impact factor: 3.969

3.  Experience with genomic sequencing in pediatric patients with congenital cardiac defects in a large community hospital.

Authors:  Natalie S Hauser; Benjamin D Solomon; Thierry Vilboux; Alina Khromykh; Rajiv Baveja; Dale L Bodian
Journal:  Mol Genet Genomic Med       Date:  2018-01-25       Impact factor: 2.183

Review 4.  Clinical Application of Genome and Exome Sequencing as a Diagnostic Tool for Pediatric Patients: a Scoping Review of the Literature.

Authors:  Hadley Stevens Smith; J Michael Swint; Seema R Lalani; Jose-Miguel Yamal; Marcia C de Oliveira Otto; Stephan Castellanos; Amy Taylor; Brendan H Lee; Heidi V Russell
Journal:  Genet Med       Date:  2018-05-14       Impact factor: 8.822

  4 in total

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