Literature DB >> 26732560

Genome-Wide Association Analysis of Young-Onset Stroke Identifies a Locus on Chromosome 10q25 Near HABP2.

Yu-Ching Cheng1, Tara M Stanne1, Anne-Katrin Giese1, Weang Kee Ho1, Matthew Traylor1, Philippe Amouyel1, Elizabeth G Holliday1, Rainer Malik1, Huichun Xu1, Steven J Kittner1, John W Cole1, Jeffrey R O'Connell1, John Danesh1, Asif Rasheed1, Wei Zhao1, Stefan Engelter1, Caspar Grond-Ginsbach1, Yoichiro Kamatani1, Mark Lathrop1, Didier Leys1, Vincent Thijs1, Tiina M Metso1, Turgut Tatlisumak1, Alessandro Pezzini1, Eugenio A Parati1, Bo Norrving1, Steve Bevan1, Peter M Rothwell1, Cathie Sudlow1, Agnieszka Slowik1, Arne Lindgren1, Matthew R Walters1, Jim Jannes1, Jess Shen1, David Crosslin1, Kimberly Doheny1, Cathy C Laurie1, Sandip M Kanse1, Joshua C Bis1, Myriam Fornage1, Thomas H Mosley1, Jemma C Hopewell1, Konstantin Strauch1, Martina Müller-Nurasyid1, Christian Gieger1, Melanie Waldenberger1, Annette Peters1, Christine Meisinger1, M Arfan Ikram1, W T Longstreth1, James F Meschia1, Sudha Seshadri1, Pankaj Sharma1, Bradford Worrall1, Christina Jern1, Christopher Levi1, Martin Dichgans1, Giorgio B Boncoraglio1, Hugh S Markus1, Stephanie Debette1, Arndt Rolfs1, Danish Saleheen1, Braxton D Mitchell1.   

Abstract

BACKGROUND AND
PURPOSE: Although a genetic contribution to ischemic stroke is well recognized, only a handful of stroke loci have been identified by large-scale genetic association studies to date. Hypothesizing that genetic effects might be stronger for early- versus late-onset stroke, we conducted a 2-stage meta-analysis of genome-wide association studies, focusing on stroke cases with an age of onset <60 years.
METHODS: The discovery stage of our genome-wide association studies included 4505 cases and 21 968 controls of European, South-Asian, and African ancestry, drawn from 6 studies. In Stage 2, we selected the lead genetic variants at loci with association P<5×10(-6) and performed in silico association analyses in an independent sample of ≤1003 cases and 7745 controls.
RESULTS: One stroke susceptibility locus at 10q25 reached genome-wide significance in the combined analysis of all samples from the discovery and follow-up stages (rs11196288; odds ratio =1.41; P=9.5×10(-9)). The associated locus is in an intergenic region between TCF7L2 and HABP2. In a further analysis in an independent sample, we found that 2 single nucleotide polymorphisms in high linkage disequilibrium with rs11196288 were significantly associated with total plasma factor VII-activating protease levels, a product of HABP2.
CONCLUSIONS: HABP2, which encodes an extracellular serine protease involved in coagulation, fibrinolysis, and inflammatory pathways, may be a genetic susceptibility locus for early-onset stroke.
© 2016 American Heart Association, Inc.

Entities:  

Keywords:  factor VII; genetics; genome-wide analysis; ischemic stroke; stroke

Mesh:

Substances:

Year:  2016        PMID: 26732560      PMCID: PMC4729659          DOI: 10.1161/STROKEAHA.115.011328

Source DB:  PubMed          Journal:  Stroke        ISSN: 0039-2499            Impact factor:   7.914


  29 in total

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2.  Association of GWAS-Reported Variant rs11196288 near HABP2 with Ischemic Stroke in Chinese Han Population.

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