Literature DB >> 26732245

A Brief Survey of State-of-the-Art BioSAXS.

Thomas Bizien, Dominique Durand, Pierre Roblina, Aurélien Thureau, Patrice Vachette, Javier Pérez1.   

Abstract

In the field of structural biology, Small Angle X-ray Scattering (SAXS) has undergone a tremendous evolution in the last two decades. From a craft reserved to a few experts in the late 80's, it has now turned into a high-throughput technique, following the same trend as macromolecular crystallography. Synchrotron radiation has played a key role in this evolution, by providing intense X-ray beams of high optical quality that made possible the recording of statistically meaningful data from weakly scattering biological solutions in a reasonable time. This, in turn, prompted the development of powerful and specific software for data analysis and modeling. In this mini-review, mainly addressed towards a broad readership, representing as many potential users, we try to summarize the latest aspects of evolution of BioSAXS, both conceptually and from the point of view of instrumentation. We emphasize the need for complementary experimental or computational techniques used in combination with SAXS. The great potential of these multi-pronged approaches is illustrated by a series of very recent studies covering the various ways and means of using BioSAXS.

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Year:  2016        PMID: 26732245     DOI: 10.2174/0929866523666160106153655

Source DB:  PubMed          Journal:  Protein Pept Lett        ISSN: 0929-8665            Impact factor:   1.890


  16 in total

1.  The domain architecture of the protozoan protein J-DNA-binding protein 1 suggests synergy between base J DNA binding and thymidine hydroxylase activity.

Authors:  Athanassios Adamopoulos; Tatjana Heidebrecht; Jeroen Roosendaal; Wouter G Touw; Isabelle Q Phan; Jos Beijnen; Anastassis Perrakis
Journal:  J Biol Chem       Date:  2019-07-10       Impact factor: 5.157

2.  Structural Description of the Nipah Virus Phosphoprotein and Its Interaction with STAT1.

Authors:  Malene Ringkjøbing Jensen; Filip Yabukarski; Guillaume Communie; Eric Condamine; Caroline Mas; Valentina Volchkova; Nicolas Tarbouriech; Jean-Marie Bourhis; Viktor Volchkov; Martin Blackledge; Marc Jamin
Journal:  Biophys J       Date:  2020-04-18       Impact factor: 4.033

3.  Resolution of ab initio shapes determined from small-angle scattering.

Authors:  Anne T Tuukkanen; Gerard J Kleywegt; Dmitri I Svergun
Journal:  IUCrJ       Date:  2016-10-27       Impact factor: 4.769

4.  Development of tools to automate quantitative analysis of radiation damage in SAXS experiments.

Authors:  Jonathan C Brooks-Bartlett; Rebecca A Batters; Charles S Bury; Edward D Lowe; Helen Mary Ginn; Adam Round; Elspeth F Garman
Journal:  J Synchrotron Radiat       Date:  2017-01-01       Impact factor: 2.616

5.  Improved radiation dose efficiency in solution SAXS using a sheath flow sample environment.

Authors:  Nigel Kirby; Nathan Cowieson; Adrian M Hawley; Stephen T Mudie; Duncan J McGillivray; Michael Kusel; Vesna Samardzic-Boban; Timothy M Ryan
Journal:  Acta Crystallogr D Struct Biol       Date:  2016-11-29       Impact factor: 7.652

6.  Allosteric inhibition of the guanine nucleotide exchange factor DOCK5 by a small molecule.

Authors:  Yann Ferrandez; Wenhua Zhang; François Peurois; Lurlène Akendengué; Anne Blangy; Mahel Zeghouf; Jacqueline Cherfils
Journal:  Sci Rep       Date:  2017-10-31       Impact factor: 4.379

7.  2017 publication guidelines for structural modelling of small-angle scattering data from biomolecules in solution: an update.

Authors:  Jill Trewhella; Anthony P Duff; Dominique Durand; Frank Gabel; J Mitchell Guss; Wayne A Hendrickson; Greg L Hura; David A Jacques; Nigel M Kirby; Ann H Kwan; Javier Pérez; Lois Pollack; Timothy M Ryan; Andrej Sali; Dina Schneidman-Duhovny; Torsten Schwede; Dmitri I Svergun; Masaaki Sugiyama; John A Tainer; Patrice Vachette; John Westbrook; Andrew E Whitten
Journal:  Acta Crystallogr D Struct Biol       Date:  2017-08-18       Impact factor: 7.652

Review 8.  Glycoscience@Synchrotron: Synchrotron radiation applied to structural glycoscience.

Authors:  Serge Pérez; Daniele de Sanctis
Journal:  Beilstein J Org Chem       Date:  2017-06-14       Impact factor: 2.883

Review 9.  Molecular Modeling of the Catalytic Domain of CyaA Deepened the Knowledge of Its Functional Dynamics.

Authors:  Thérèse E Malliavin
Journal:  Toxins (Basel)       Date:  2017-06-26       Impact factor: 4.546

10.  Considerations for Sample Preparation Using Size-Exclusion Chromatography for Home and Synchrotron Sources.

Authors:  Robert P Rambo
Journal:  Adv Exp Med Biol       Date:  2017       Impact factor: 2.622

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