Literature DB >> 2672454

Protein motifs and data-base searching.

J M Thornton, S P Gardner.   

Abstract

Protein structure and sequence motifs are now recognized for many different protein families and topologies. To aid identification and use of these motifs in modelling and prediction, it has become necessary to establish consistent data bases of protein structure, including not only coordinates, but also derived data such as secondary structure location and solvent accessibilities. This article describes first attempts to construct such data bases and explains how they can be used.

Mesh:

Year:  1989        PMID: 2672454     DOI: 10.1016/0968-0004(89)90069-8

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  7 in total

1.  PDBSiteScan: a program for searching for active, binding and posttranslational modification sites in the 3D structures of proteins.

Authors:  Vladimir A Ivanisenko; Sergey S Pintus; Dmitry A Grigorovich; Nickolay A Kolchanov
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

2.  Efficient detection of three-dimensional structural motifs in biological macromolecules by computer vision techniques.

Authors:  R Nussinov; H J Wolfson
Journal:  Proc Natl Acad Sci U S A       Date:  1991-12-01       Impact factor: 11.205

3.  Predicted structure of the extracellular region of ligand-gated ion-channel receptors shows SH2-like and SH3-like domains forming the ligand-binding site.

Authors:  J E Gready; S Ranganathan; P R Schofield; Y Matsuo; K Nishikawa
Journal:  Protein Sci       Date:  1997-05       Impact factor: 6.725

4.  Discovering structural correlations in alpha-helices.

Authors:  T M Klingler; D L Brutlag
Journal:  Protein Sci       Date:  1994-10       Impact factor: 6.725

5.  Anionic phospholipids bind to L-selectin (but not E-selectin) at a site distinct from the carbohydrate-binding site.

Authors:  R Malhotra; N R Taylor; M I Bird
Journal:  Biochem J       Date:  1996-02-15       Impact factor: 3.857

6.  Arthrobacter D-xylose isomerase: protein-engineered subunit interfaces.

Authors:  L Varsani; T Cui; M Rangarajan; B S Hartley; J Goldberg; C Collyer; D M Blow
Journal:  Biochem J       Date:  1993-04-15       Impact factor: 3.857

7.  Random sampling of the Protein Data Bank: RaSPDB.

Authors:  Oliviero Carugo
Journal:  Sci Rep       Date:  2021-12-17       Impact factor: 4.379

  7 in total

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