Literature DB >> 26720267

Coupled binding and folding of intrinsically disordered proteins: what can we learn from kinetics?

Stefano Gianni1, Jakob Dogan2, Per Jemth3.   

Abstract

Protein or protein regions that are not forming well-defined structures in their free states under native-like conditions are called intrinsically disordered proteins. Such proteins are very common in protein-protein interactions, where their disorder apparently gives several advantages including optimal binding properties. To fully appreciate why protein disorder is advantageous for protein-protein interactions we need to understand the mechanism(s) of interaction. However, elucidating mechanisms in protein-protein interactions is usually very challenging. Here we discuss how kinetics in combination with protein engineering and structural information can be used to depict details of protein-protein interactions involving intrinsically disordered proteins.
Copyright © 2015 Elsevier Ltd. All rights reserved.

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Year:  2015        PMID: 26720267     DOI: 10.1016/j.sbi.2015.11.012

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  26 in total

Review 1.  Features of molecular recognition of intrinsically disordered proteins via coupled folding and binding.

Authors:  Jing Yang; Meng Gao; Junwen Xiong; Zhengding Su; Yongqi Huang
Journal:  Protein Sci       Date:  2019-09-04       Impact factor: 6.725

2.  GADIS: Algorithm for designing sequences to achieve target secondary structure profiles of intrinsically disordered proteins.

Authors:  Tyler S Harmon; Michael D Crabtree; Sarah L Shammas; Ammon E Posey; Jane Clarke; Rohit V Pappu
Journal:  Protein Eng Des Sel       Date:  2016-08-08       Impact factor: 1.650

Review 3.  Templated folding of intrinsically disordered proteins.

Authors:  Angelo Toto; Francesca Malagrinò; Lorenzo Visconti; Francesca Troilo; Livia Pagano; Maurizio Brunori; Per Jemth; Stefano Gianni
Journal:  J Biol Chem       Date:  2020-04-06       Impact factor: 5.157

4.  Perfluoro-tert-butyl Homoserine Is a Helix-Promoting, Highly Fluorinated, NMR-Sensitive Aliphatic Amino Acid: Detection of the Estrogen Receptor·Coactivator Protein-Protein Interaction by 19F NMR.

Authors:  Caitlin M Tressler; Neal J Zondlo
Journal:  Biochemistry       Date:  2017-02-15       Impact factor: 3.162

5.  Hairpin RNA-induced conformational change of a eukaryotic-specific lysyl-tRNA synthetase extension and role of adjacent anticodon-binding domain.

Authors:  Sheng Liu; Maryanne Refaei; Shuohui Liu; Aaron Decker; Jennifer M Hinerman; Andrew B Herr; Mike Howell; Karin Musier-Forsyth; Pearl Tsang
Journal:  J Biol Chem       Date:  2020-07-01       Impact factor: 5.157

6.  Kinetic Insights into the Binding between the nSH3 Domain of CrkII and Proline-Rich Motifs in cAbl.

Authors:  Danyun Zeng; Veer S Bhatt; Qingliang Shen; Jae-Hyun Cho
Journal:  Biophys J       Date:  2016-11-01       Impact factor: 4.033

7.  Coupled Binding and Helix Formation Monitored by Synchrotron-Radiation Circular Dichroism.

Authors:  Elin Karlsson; Eva Andersson; Nykola C Jones; Søren Vrønning Hoffmann; Per Jemth; Magnus Kjaergaard
Journal:  Biophys J       Date:  2019-07-19       Impact factor: 4.033

8.  Effects of Ligand Binding on the Energy Landscape of Acyl-CoA-Binding Protein.

Authors:  Punam Sonar; Luca Bellucci; Alessandro Mossa; Pétur O Heidarsson; Birthe B Kragelund; Ciro Cecconi
Journal:  Biophys J       Date:  2020-09-24       Impact factor: 4.033

9.  How Robust Is the Mechanism of Folding-Upon-Binding for an Intrinsically Disordered Protein?

Authors:  Daniela Bonetti; Francesca Troilo; Maurizio Brunori; Sonia Longhi; Stefano Gianni
Journal:  Biophys J       Date:  2018-04-24       Impact factor: 4.033

10.  Uncoupling the Folding and Binding of an Intrinsically Disordered Protein.

Authors:  Anusha Poosapati; Emily Gregory; Wade M Borcherds; Lucia B Chemes; Gary W Daughdrill
Journal:  J Mol Biol       Date:  2018-06-08       Impact factor: 5.469

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