Literature DB >> 26719120

TOMATOMA Update: Phenotypic and Metabolite Information in the Micro-Tom Mutant Resource.

Masahito Shikata1, Ken Hoshikawa2, Tohru Ariizumi2, Naoya Fukuda3, Yukiko Yamazaki4, Hiroshi Ezura1.   

Abstract

TOMATOMA (http://tomatoma.nbrp.jp/) is a tomato mutant database providing visible phenotypic data of tomato mutant lines generated by ethylmethane sulfonate (EMS) treatment or γ-ray irradiation in the genetic background of Micro-Tom, a small and rapidly growing variety. To increase mutation efficiency further, mutagenized M3 seeds were subjected to a second round of EMS treatment; M3M1 populations were generated. These plants were self-pollinated, and 4,952 lines of M3M2 mutagenized seeds were generated. We checked for visible phenotypes in the M3M2 plants, and 618 mutant lines with 1,194 phenotypic categories were identified. In addition to the phenotypic information, we investigated Brix values and carotenoid contents in the fruits of individual mutants. Of 466 samples from 171 mutant lines, Brix values and carotenoid contents were between 3.2% and 11.6% and 6.9 and 37.3 µg g(-1) FW, respectively. This metabolite information concerning the mutant fruits would be useful in breeding programs as well as for the elucidation of metabolic regulation. Researchers are able to browse and search this phenotypic and metabolite information and order seeds of individual mutants via TOMATOMA. Our new Micro-Tom double-mutagenized populations and the metabolic information could provide a valuable genetic toolkit to accelerate tomato research and potential breeding programs.
© The Author 2015. Published by Oxford University Press on behalf of Japanese Society of Plant Physiologists. All rights reserved. For permissions, please email: journals.permissions@oup.com.

Entities:  

Keywords:  Database; Fruit; Micro-Tom; Mutant; Resource; Tomato

Mesh:

Substances:

Year:  2015        PMID: 26719120     DOI: 10.1093/pcp/pcv194

Source DB:  PubMed          Journal:  Plant Cell Physiol        ISSN: 0032-0781            Impact factor:   4.927


  15 in total

1.  Efficient transient protein expression in tomato cultivars and wild species using agroinfiltration-mediated high expression system.

Authors:  Ken Hoshikawa; Satoshi Fujita; Na Renhu; Kentaro Ezura; Tsuyoshi Yamamoto; Satoko Nonaka; Hiroshi Ezura; Kenji Miura
Journal:  Plant Cell Rep       Date:  2018-10-17       Impact factor: 4.570

2.  DES-TOMATO: A Knowledge Exploration System Focused On Tomato Species.

Authors:  Adil Salhi; Sónia Negrão; Magbubah Essack; Mitchell J L Morton; Salim Bougouffa; Rozaimi Razali; Aleksandar Radovanovic; Benoit Marchand; Maxat Kulmanov; Robert Hoehndorf; Mark Tester; Vladimir B Bajic
Journal:  Sci Rep       Date:  2017-07-20       Impact factor: 4.379

Review 3.  Use of Natural Diversity and Biotechnology to Increase the Quality and Nutritional Content of Tomato and Grape.

Authors:  Quentin Gascuel; Gianfranco Diretto; Antonio J Monforte; Ana M Fortes; Antonio Granell
Journal:  Front Plant Sci       Date:  2017-05-12       Impact factor: 5.753

4.  TOMATOMICS: A Web Database for Integrated Omics Information in Tomato.

Authors:  Toru Kudo; Masaaki Kobayashi; Shin Terashima; Minami Katayama; Soichi Ozaki; Maasa Kanno; Misa Saito; Koji Yokoyama; Hajime Ohyanagi; Koh Aoki; Yasutaka Kubo; Kentaro Yano
Journal:  Plant Cell Physiol       Date:  2017-01-01       Impact factor: 4.927

5.  The Analysis of Physiological Variations in M2 Generation of Solanum melongena L. Mutagenized by Ethyl Methane Sulfonate.

Authors:  Xiao Xi-Ou; Lin Wenqiu; Li Wei; Gao Xiaoming; Lv Lingling; Ma Feiyue; Liu Yuge
Journal:  Front Plant Sci       Date:  2017-01-19       Impact factor: 5.753

6.  Genome-Wide Analysis of Artificial Mutations Induced by Ethyl Methanesulfonate in the Eggplant (Solanum melongena L.).

Authors:  Xi-Ou Xiao; Wenqiu Lin; Ke Li; Xuefeng Feng; Hui Jin; Huafeng Zou
Journal:  Genes (Basel)       Date:  2019-08-07       Impact factor: 4.096

7.  Functional Disruption of the Tomato Putative Ortholog of HAWAIIAN SKIRT Results in Facultative Parthenocarpy, Reduced Fertility and Leaf Morphological Defects.

Authors:  Farida Damayanti; Fabien Lombardo; Jun-Ichiro Masuda; Yoshihito Shinozaki; Takuji Ichino; Ken Hoshikawa; Yoshihiro Okabe; Ning Wang; Naoya Fukuda; Tohru Ariizumi; Hiroshi Ezura
Journal:  Front Plant Sci       Date:  2019-10-14       Impact factor: 5.753

Review 8.  Advances in Omics Approaches for Abiotic Stress Tolerance in Tomato.

Authors:  Juhi Chaudhary; Praveen Khatri; Pankaj Singla; Surbhi Kumawat; Anu Kumari; Vinaykumar R; Amit Vikram; Salesh Kumar Jindal; Hemant Kardile; Rahul Kumar; Humira Sonah; Rupesh Deshmukh
Journal:  Biology (Basel)       Date:  2019-11-25

Review 9.  You Are What You Eat: Application of Metabolomics Approaches to Advance Nutrition Research.

Authors:  Abdul-Hamid M Emwas; Nahla Al-Rifai; Kacper Szczepski; Shuruq Alsuhaymi; Saleh Rayyan; Hanan Almahasheer; Mariusz Jaremko; Lorraine Brennan; Joanna Izabela Lachowicz
Journal:  Foods       Date:  2021-05-31

10.  Identification and functional study of a mild allele of SlDELLA gene conferring the potential for improved yield in tomato.

Authors:  Yoshihito Shinozaki; Kentaro Ezura; Jianhong Hu; Yoshihiro Okabe; Camille Bénard; Duyen Prodhomme; Yves Gibon; Tai-Ping Sun; Hiroshi Ezura; Tohru Ariizumi
Journal:  Sci Rep       Date:  2018-08-13       Impact factor: 4.379

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