Literature DB >> 26716720

Joint optimization of segmentation and shape prior from level-set-based statistical shape model, and its application to the automated segmentation of abdominal organs.

Atsushi Saito1, Shigeru Nawano2, Akinobu Shimizu3.   

Abstract

The goal of this study is to provide a theoretical framework for accurately optimizing the segmentation energy considering all of the possible shapes generated from the level-set-based statistical shape model (SSM). The proposed algorithm solves the well-known open problem, in which a shape prior may not be optimal in terms of an objective functional that needs to be minimized during segmentation. The algorithm allows the selection of an optimal shape prior from among all possible shapes generated from an SSM by conducting a branch-and-bound search over an eigenshape space. The proposed algorithm does not require predefined shape templates or the construction of a hierarchical clustering tree before graph-cut segmentation. It jointly optimizes an objective functional in terms of both the shape prior and segmentation labeling, and finds an optimal solution by considering all possible shapes generated from an SSM. We apply the proposed algorithm to both pancreas and spleen segmentation using multiphase computed tomography volumes, and we compare the results obtained with those produced by a conventional algorithm employing a branch-and-bound search over a search tree of predefined shapes, which were sampled discretely from an SSM. The proposed algorithm significantly improves the segmentation performance in terms of the Jaccard index and Dice similarity index. In addition, we compare the results with the state-of-the-art multiple abdominal organs segmentation algorithm, and confirmed that the performances of both algorithms are comparable to each other. We discuss the high computational efficiency of the proposed algorithm, which was determined experimentally using a normalized number of traversed nodes in a search tree, and the extensibility of the proposed algorithm to other SSMs or energy functionals.
Copyright © 2015 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Branch-and-bound search; Computed tomography; Graph cuts; Segmentation; Statistical shape model

Mesh:

Year:  2015        PMID: 26716720     DOI: 10.1016/j.media.2015.11.003

Source DB:  PubMed          Journal:  Med Image Anal        ISSN: 1361-8415            Impact factor:   8.545


  11 in total

1.  Automated Segmentation of Tissues Using CT and MRI: A Systematic Review.

Authors:  Leon Lenchik; Laura Heacock; Ashley A Weaver; Robert D Boutin; Tessa S Cook; Jason Itri; Christopher G Filippi; Rao P Gullapalli; James Lee; Marianna Zagurovskaya; Tara Retson; Kendra Godwin; Joey Nicholson; Ponnada A Narayana
Journal:  Acad Radiol       Date:  2019-08-10       Impact factor: 3.173

Review 2.  Artificial intelligence: a critical review of current applications in pancreatic imaging.

Authors:  Maxime Barat; Guillaume Chassagnon; Anthony Dohan; Sébastien Gaujoux; Romain Coriat; Christine Hoeffel; Christophe Cassinotto; Philippe Soyer
Journal:  Jpn J Radiol       Date:  2021-02-06       Impact factor: 2.374

3.  Fast approximation for joint optimization of segmentation, shape, and location priors, and its application in gallbladder segmentation.

Authors:  Atsushi Saito; Shigeru Nawano; Akinobu Shimizu
Journal:  Int J Comput Assist Radiol Surg       Date:  2017-03-27       Impact factor: 2.924

4.  Automatic abdominal multi-organ segmentation using deep convolutional neural network and time-implicit level sets.

Authors:  Peijun Hu; Fa Wu; Jialin Peng; Yuanyuan Bao; Feng Chen; Dexing Kong
Journal:  Int J Comput Assist Radiol Surg       Date:  2016-11-24       Impact factor: 2.924

5.  Automated liver segmentation from a postmortem CT scan based on a statistical shape model.

Authors:  Atsushi Saito; Seiji Yamamoto; Shigeru Nawano; Akinobu Shimizu
Journal:  Int J Comput Assist Radiol Surg       Date:  2016-09-22       Impact factor: 2.924

6.  ShapeCut: Bayesian surface estimation using shape-driven graph.

Authors:  Gopalkrishna Veni; Shireen Y Elhabian; Ross T Whitaker
Journal:  Med Image Anal       Date:  2017-04-29       Impact factor: 8.545

7.  AAR-RT - A system for auto-contouring organs at risk on CT images for radiation therapy planning: Principles, design, and large-scale evaluation on head-and-neck and thoracic cancer cases.

Authors:  Xingyu Wu; Jayaram K Udupa; Yubing Tong; Dewey Odhner; Gargi V Pednekar; Charles B Simone; David McLaughlin; Chavanon Apinorasethkul; Ontida Apinorasethkul; John Lukens; Dimitris Mihailidis; Geraldine Shammo; Paul James; Akhil Tiwari; Lisa Wojtowicz; Joseph Camaratta; Drew A Torigian
Journal:  Med Image Anal       Date:  2019-01-29       Impact factor: 8.545

8.  Robust and Accurate Mandible Segmentation on Dental CBCT Scans Affected by Metal Artifacts Using a Prior Shape Model.

Authors:  Bingjiang Qiu; Hylke van der Wel; Joep Kraeima; Haye Hendrik Glas; Jiapan Guo; Ronald J H Borra; Max Johannes Hendrikus Witjes; Peter M A van Ooijen
Journal:  J Pers Med       Date:  2021-05-01

9.  A Semiautomated Deep Learning Approach for Pancreas Segmentation.

Authors:  Meixiang Huang; Chongfei Huang; Jing Yuan; Dexing Kong
Journal:  J Healthc Eng       Date:  2021-07-02       Impact factor: 2.682

10.  Attention gated networks: Learning to leverage salient regions in medical images.

Authors:  Jo Schlemper; Ozan Oktay; Michiel Schaap; Mattias Heinrich; Bernhard Kainz; Ben Glocker; Daniel Rueckert
Journal:  Med Image Anal       Date:  2019-02-05       Impact factor: 8.545

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