Literature DB >> 26716558

OASIS: web-based platform for exploring cancer multi-omics data.

Julio Fernandez-Banet1, Anthony Esposito2, Scott Coffin2, Istvan Boerner Horvath2, Heather Estrella1, Sabine Schefzick2, Shibing Deng1, Kai Wang1, Keith AChing1, Ying Ding1, Peter Roberts2, Paul A Rejto1, Zhengyan Kan1.   

Abstract

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Year:  2016        PMID: 26716558     DOI: 10.1038/nmeth.3692

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


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  5 in total

1.  The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data.

Authors:  Ethan Cerami; Jianjiong Gao; Ugur Dogrusoz; Benjamin E Gross; Selcuk Onur Sumer; Bülent Arman Aksoy; Anders Jacobsen; Caitlin J Byrne; Michael L Heuer; Erik Larsson; Yevgeniy Antipin; Boris Reva; Arthur P Goldberg; Chris Sander; Nikolaus Schultz
Journal:  Cancer Discov       Date:  2012-05       Impact factor: 39.397

2.  Human genomics. The Genotype-Tissue Expression (GTEx) pilot analysis: multitissue gene regulation in humans.

Authors: 
Journal:  Science       Date:  2015-05-07       Impact factor: 47.728

3.  International Cancer Genome Consortium Data Portal--a one-stop shop for cancer genomics data.

Authors:  Junjun Zhang; Joachim Baran; A Cros; Jonathan M Guberman; Syed Haider; Jack Hsu; Yong Liang; Elena Rivkin; Jianxin Wang; Brett Whitty; Marie Wong-Erasmus; Long Yao; Arek Kasprzyk
Journal:  Database (Oxford)       Date:  2011-09-19       Impact factor: 3.451

4.  The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity.

Authors:  Jordi Barretina; Giordano Caponigro; Nicolas Stransky; Kavitha Venkatesan; Adam A Margolin; Sungjoon Kim; Christopher J Wilson; Joseph Lehár; Gregory V Kryukov; Dmitriy Sonkin; Anupama Reddy; Manway Liu; Lauren Murray; Michael F Berger; John E Monahan; Paula Morais; Jodi Meltzer; Adam Korejwa; Judit Jané-Valbuena; Felipa A Mapa; Joseph Thibault; Eva Bric-Furlong; Pichai Raman; Aaron Shipway; Ingo H Engels; Jill Cheng; Guoying K Yu; Jianjun Yu; Peter Aspesi; Melanie de Silva; Kalpana Jagtap; Michael D Jones; Li Wang; Charles Hatton; Emanuele Palescandolo; Supriya Gupta; Scott Mahan; Carrie Sougnez; Robert C Onofrio; Ted Liefeld; Laura MacConaill; Wendy Winckler; Michael Reich; Nanxin Li; Jill P Mesirov; Stacey B Gabriel; Gad Getz; Kristin Ardlie; Vivien Chan; Vic E Myer; Barbara L Weber; Jeff Porter; Markus Warmuth; Peter Finan; Jennifer L Harris; Matthew Meyerson; Todd R Golub; Michael P Morrissey; William R Sellers; Robert Schlegel; Levi A Garraway
Journal:  Nature       Date:  2012-03-28       Impact factor: 49.962

Review 5.  Visualizing multidimensional cancer genomics data.

Authors:  Michael P Schroeder; Abel Gonzalez-Perez; Nuria Lopez-Bigas
Journal:  Genome Med       Date:  2013-01-31       Impact factor: 11.117

  5 in total
  20 in total

1.  GlioVis data portal for visualization and analysis of brain tumor expression datasets.

Authors:  Robert L Bowman; Qianghu Wang; Angel Carro; Roel G W Verhaak; Massimo Squatrito
Journal:  Neuro Oncol       Date:  2016-11-09       Impact factor: 12.300

2.  Genome-Scale Signatures of Gene Interaction from Compound Screens Predict Clinical Efficacy of Targeted Cancer Therapies.

Authors:  Peng Jiang; Winston Lee; Xujuan Li; Carl Johnson; Jun S Liu; Myles Brown; Jon Christopher Aster; X Shirley Liu
Journal:  Cell Syst       Date:  2018-02-07       Impact factor: 10.304

3.  Metabolic Modifier Screen Reveals Secondary Targets of Protein Kinase Inhibitors within Nucleotide Metabolism.

Authors:  Evan R Abt; Ethan W Rosser; Matthew A Durst; Vincent Lok; Soumya Poddar; Thuc M Le; Arthur Cho; Woosuk Kim; Liu Wei; Janet Song; Joseph R Capri; Shili Xu; Nanping Wu; Roger Slavik; Michael E Jung; Robert Damoiseaux; Johannes Czernin; Timothy R Donahue; Arnon Lavie; Caius G Radu
Journal:  Cell Chem Biol       Date:  2019-11-13       Impact factor: 8.116

4.  JUN-Mediated Downregulation of EGFR Signaling Is Associated with Resistance to Gefitinib in EGFR-mutant NSCLC Cell Lines.

Authors:  Kian Kani; Carolina Garri; Katrin Tiemann; Paymaneh D Malihi; Vasu Punj; Anthony L Nguyen; Janet Lee; Lindsey D Hughes; Ruth M Alvarez; Damien M Wood; Ah Young Joo; Jonathan E Katz; David B Agus; Parag Mallick
Journal:  Mol Cancer Ther       Date:  2017-05-31       Impact factor: 6.261

5.  Enhancing GTEx by bridging the gaps between genotype, gene expression, and disease.

Authors: 
Journal:  Nat Genet       Date:  2017-10-11       Impact factor: 38.330

6.  LinkedOmics: analyzing multi-omics data within and across 32 cancer types.

Authors:  Suhas V Vasaikar; Peter Straub; Jing Wang; Bing Zhang
Journal:  Nucleic Acids Res       Date:  2018-01-04       Impact factor: 16.971

7.  ATR inhibition facilitates targeting of leukemia dependence on convergent nucleotide biosynthetic pathways.

Authors:  Thuc M Le; Soumya Poddar; Joseph R Capri; Evan R Abt; Woosuk Kim; Liu Wei; Nhu T Uong; Chloe M Cheng; Daniel Braas; Mina Nikanjam; Peter Rix; Daria Merkurjev; Jesse Zaretsky; Harley I Kornblum; Antoni Ribas; Harvey R Herschman; Julian Whitelegge; Kym F Faull; Timothy R Donahue; Johannes Czernin; Caius G Radu
Journal:  Nat Commun       Date:  2017-08-14       Impact factor: 14.919

8.  HOXC8 regulates self-renewal, differentiation and transformation of breast cancer stem cells.

Authors:  Mansi Shah; Ryan Cardenas; Belinda Wang; Jenny Persson; Nigel P Mongan; Anna Grabowska; Cinzia Allegrucci
Journal:  Mol Cancer       Date:  2017-02-16       Impact factor: 27.401

9.  Transcriptional and Microenvironmental Landscape of Macrophage Transition in Cancer: A Boolean Analysis.

Authors:  Ugo Avila-Ponce de León; Aarón Vázquez-Jiménez; Meztli Matadamas-Guzman; Rosana Pelayo; Osbaldo Resendis-Antonio
Journal:  Front Immunol       Date:  2021-06-10       Impact factor: 7.561

10.  Copy number alteration of neuropeptides and receptors in multiple cancers.

Authors:  Min Zhao; Tianfang Wang; Qi Liu; Scott Cummins
Journal:  Sci Rep       Date:  2017-07-04       Impact factor: 4.379

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