| Literature DB >> 26714782 |
Xuan Dong1, Peng Zhao1, Bu Xu2, Jianhua Fan2, Fanfeng Meng1, Peng Sun1, Sidi Ju1, Yang Li1, Shuang Chang1, Weifeng Shi3, Zhizhong Cui1.
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Year: 2015 PMID: 26714782 PMCID: PMC4715165 DOI: 10.1038/emi.2015.76
Source DB: PubMed Journal: Emerg Microbes Infect ISSN: 2222-1751 Impact factor: 7.163
Figure 1A phylogenetic tree for the gp85 gene sequences of avian leukosis virus (ALV) isolated from chicken breeds indigenous to China and compared with ALV reference strains of different subgroups. The phylogenetic tree was constructed using MEGA software (version 5.1; www.megasoftware.net) with the neighbor-joining method. The bootstrap values were calculated with 1000 replicates of the alignment. The bootstrap values for major ALV subgroups are shown. All of the reference sequences were acquired from the GenBank database (www.ncbi.nlm.nih.gov/genbank). JS: isolated from Jiangsu province; ZJ: isolated from Zhejiang province; SD: isolated from Shandong province. DX: isolated from Dongxiang Blue-shelled chickens. LH: isolated from Wenshang Luhua chickens. LY: isolated from Langya chickens. TH: isolated from Taihewugu chickens. QJ: isolated from Partridge Shank chickens. QD: isolated from Qiandongnan chickens. LS: isolated from Longsheng Feng chickens. DXH: isolated from Dongxiang Black chickens. The GenBank accession numbers of the sequences are shown after the name of the virus. The scale bar indicates the nucleotide substitutions per site.