Literature DB >> 26714705

HIV-1 Reverse Transcriptase-Based Assay to Determine Cellular dNTP Concentrations.

Joseph A Hollenbaugh1, Baek Kim2,3.   

Abstract

Deoxynucleoside triphosphates (dNTPs) are the building blocks of DNA and their biosynthesis is tightly regulated in the cell. HPLC-MS and enzyme-based methods are currently employed to determine dNTP concentrations from cellular extracts. Here, we describe a highly efficient, HIV-1 reverse transcriptase (RT)-based assay to quantitate dNTP concentrations. The assay is based on the ability of HIV-1 RT to function at very low dNTP concentrations, thus providing for the high sensitivity of detection.

Entities:  

Keywords:  Deoxynucleoside triphosphates; HIV-1; Reverse transcriptase; dNTP concentration

Mesh:

Substances:

Year:  2016        PMID: 26714705      PMCID: PMC4839283          DOI: 10.1007/978-1-4939-3046-3_5

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  7 in total

1.  Evaluating the contribution of base stacking during translesion DNA replication.

Authors:  Edmunds Z Reineks; Anthony J Berdis
Journal:  Biochemistry       Date:  2004-01-20       Impact factor: 3.162

2.  Intracellular water-specific MR of microbead-adherent cells: the HeLa cell intracellular water exchange lifetime.

Authors:  L Zhao; C D Kroenke; J Song; D Piwnica-Worms; J J H Ackerman; J J Neil
Journal:  NMR Biomed       Date:  2008-02       Impact factor: 4.044

3.  Macrophage tropism of HIV-1 depends on efficient cellular dNTP utilization by reverse transcriptase.

Authors:  Tracy L Diamond; Mikhail Roshal; Varuni K Jamburuthugoda; Holly M Reynolds; Aaron R Merriam; Kwi Y Lee; Mini Balakrishnan; Robert A Bambara; Vicente Planelles; Stephen Dewhurst; Baek Kim
Journal:  J Biol Chem       Date:  2004-09-26       Impact factor: 5.157

4.  Deoxynucleoside triphosphate incorporation mechanism of foamy virus (FV) reverse transcriptase: implications for cell tropism of FV.

Authors:  Jose Santos-Velazquez; Baek Kim
Journal:  J Virol       Date:  2008-05-28       Impact factor: 5.103

5.  A novel fluorescence-based assay for the rapid detection and quantification of cellular deoxyribonucleoside triphosphates.

Authors:  Peter M Wilson; Melissa J Labonte; Jared Russell; Stan Louie; Andrew A Ghobrial; Robert D Ladner
Journal:  Nucleic Acids Res       Date:  2011-05-16       Impact factor: 16.971

6.  The role of aquaporins in dendritic cell macropinocytosis.

Authors:  A de Baey; A Lanzavecchia
Journal:  J Exp Med       Date:  2000-02-21       Impact factor: 14.307

7.  Quantitation of cellular deoxynucleoside triphosphates.

Authors:  Paola Ferraro; Elisa Franzolin; Giovanna Pontarin; Peter Reichard; Vera Bianchi
Journal:  Nucleic Acids Res       Date:  2009-12-11       Impact factor: 16.971

  7 in total
  3 in total

1.  Single-molecule detection of deoxyribonucleoside triphosphates in microdroplets.

Authors:  Boris Breiner; Kerr Johnson; Magdalena Stolarek; Ana-Luisa Silva; Aurel Negrea; Neil M Bell; Tom H Isaac; Mark Dethlefsen; Jasmin Chana; Lindsey A Ibbotson; Rebecca N Palmer; James Bush; Alexander J Dunning; David M Love; Olympia Pachoumi; Douglas J Kelly; Aya Shibahara; Mei Wu; Maciej Sosna; Paul H Dear; Fabian Tolle; Edoardo Petrini; Michele Amasio; Leigh R Shelford; Monica S Saavedra; Eoin Sheridan; Jekaterina Kuleshova; Gareth J Podd; Barnaby W Balmforth; Cameron A Frayling
Journal:  Nucleic Acids Res       Date:  2019-09-26       Impact factor: 16.971

2.  Isocratic HPLC analysis for the simultaneous determination of dNTPs, rNTPs and ADP in biological samples.

Authors:  Farahnaz Ranjbarian; Sushma Sharma; Giulia Falappa; Walter Taruschio; Andrei Chabes; Anders Hofer
Journal:  Nucleic Acids Res       Date:  2022-02-22       Impact factor: 16.971

3.  Simultaneous determination of ribonucleoside and deoxyribonucleoside triphosphates in biological samples by hydrophilic interaction liquid chromatography coupled with tandem mass spectrometry.

Authors:  Ziqing Kong; Shaodong Jia; Anna Lena Chabes; Patrik Appelblad; Richard Lundmark; Thomas Moritz; Andrei Chabes
Journal:  Nucleic Acids Res       Date:  2018-06-20       Impact factor: 16.971

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.