Literature DB >> 26714215

Two complete chloroplast genomes of white campion (Silene latifolia) from male and female individuals.

Zhiqiang Wu1, Luke R Tembrock1.   

Abstract

In this study, we assembled two individuals' complete chloroplast genomes with one male and one female from the dioecious plant species white campion (Silene latifolia). The two chloroplast genomes have an identical composition with each other as a circular molecule of 150 931 bp in length, with an overall GC content of 36.4%. The genomes consist of a pair of inverted repeats (IRs) of 25 503 bp, separated by a large single-copy (LSC) region and a small single-copy (SSC) region of 82 708 and 17 217 bp, respectively. The genomes contain 111 single copy genes, including 77 protein-coding genes, 4 ribosomal RNA genes and 30 transfer RNA genes. In these protein-coding genes, eight genes (rpl16, rpoC1, rps16, petD, petB, ndhB, ndhA and atpF) contain a single intron and three genes (rps12, clpP and ycf3) contain two introns. The two newly sequenced chloroplast genomes provide valuable information for detecting polymorphisms within species and between sexes.

Entities:  

Keywords:  Chloroplast genome; Silene latifolia; female; male; next-generation sequencing

Mesh:

Substances:

Year:  2015        PMID: 26714215     DOI: 10.3109/19401736.2015.1126829

Source DB:  PubMed          Journal:  Mitochondrial DNA A DNA Mapp Seq Anal        ISSN: 2470-1394            Impact factor:   1.514


  3 in total

1.  The complete plastid genome of the wild rice species Oryza brachyantha (Poaceae).

Authors:  Fengqi Liu; Luke R Tembrock; Cheng Sun; Guiqing Han; Changhong Guo; Zhiqiang Wu
Journal:  Mitochondrial DNA B Resour       Date:  2016-04-11       Impact factor: 0.658

2.  Chloroplast Genome Sequence of Lagerstroemia guilinensis (Lythraceae, Myrtales), a Species Endemic to the Guilin Limestone Area in Guangxi Province, China.

Authors:  Cuihua Gu; Luke R Tembrock; Zhiqiang Wu
Journal:  Genome Announc       Date:  2016-05-19

3.  De Novo Assembly Discovered Novel Structures in Genome of Plastids and Revealed Divergent Inverted Repeats in Mammillaria (Cactaceae, Caryophyllales).

Authors:  Sofía Solórzano; Delil A Chincoya; Alejandro Sanchez-Flores; Karel Estrada; Clara E Díaz-Velásquez; Antonio González-Rodríguez; Felipe Vaca-Paniagua; Patricia Dávila; Salvador Arias
Journal:  Plants (Basel)       Date:  2019-10-01
  3 in total

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