Literature DB >> 26711713

An Unsupervised Online Spike-Sorting Framework.

Simeon Knieling1,2, Kousik S Sridharan1, Paolo Belardinelli1, Georgios Naros1, Daniel Weiss3, Florian Mormann2, Alireza Gharabaghi1.   

Abstract

Extracellular neuronal microelectrode recordings can include action potentials from multiple neurons. To separate spikes from different neurons, they can be sorted according to their shape, a procedure referred to as spike-sorting. Several algorithms have been reported to solve this task. However, when clustering outcomes are unsatisfactory, most of them are difficult to adjust to achieve the desired results. We present an online spike-sorting framework that uses feature normalization and weighting to maximize the distinctiveness between different spike shapes. Furthermore, multiple criteria are applied to either facilitate or prevent cluster fusion, thereby enabling experimenters to fine-tune the sorting process. We compare our method to established unsupervised offline (Wave_Clus (WC)) and online (OSort (OS)) algorithms by examining their performance in sorting various test datasets using two different scoring systems (AMI and the Adamos metric). Furthermore, we evaluate sorting capabilities on intra-operative recordings using established quality metrics. Compared to WC and OS, our algorithm achieved comparable or higher scores on average and produced more convincing sorting results for intra-operative datasets. Thus, the presented framework is suitable for both online and offline analysis and could substantially improve the quality of microelectrode-based data evaluation for research and clinical application.

Keywords:  Online spike-sorting; deep brain stimulation; intra-operative mapping; microelectrode recording; real-time clustering; unsupervised

Mesh:

Year:  2015        PMID: 26711713     DOI: 10.1142/S0129065715500422

Source DB:  PubMed          Journal:  Int J Neural Syst        ISSN: 0129-0657            Impact factor:   5.866


  4 in total

Review 1.  From End to End: Gaining, Sorting, and Employing High-Density Neural Single Unit Recordings.

Authors:  Réka Barbara Bod; János Rokai; Domokos Meszéna; Richárd Fiáth; István Ulbert; Gergely Márton
Journal:  Front Neuroinform       Date:  2022-06-13       Impact factor: 3.739

2.  Identification of Retinal Ganglion Cell Firing Patterns Using Clustering Analysis Supplied with Failure Diagnosis.

Authors:  Alireza Ghahari; Sumit R Kumar; Tudor C Badea
Journal:  Int J Neural Syst       Date:  2018-02-22       Impact factor: 5.866

3.  Reliable Analysis of Single-Unit Recordings from the Human Brain under Noisy Conditions: Tracking Neurons over Hours.

Authors:  Johannes Niediek; Jan Boström; Christian E Elger; Florian Mormann
Journal:  PLoS One       Date:  2016-12-08       Impact factor: 3.240

4.  Spike sorting based on shape, phase, and distribution features, and K-TOPS clustering with validity and error indices.

Authors:  Carmen Rocío Caro-Martín; José M Delgado-García; Agnès Gruart; R Sánchez-Campusano
Journal:  Sci Rep       Date:  2018-12-12       Impact factor: 4.379

  4 in total

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