Literature DB >> 26711107

Reply to Artifacts in the data of Hu et al.

Zheng Hu1, Da Zhu1, Wei Wang2, Weiyang Li3,4, Wenlong Jia3,5, Xi Zeng3, Xun Xu3, Hui Wang1, Ding Ma1.   

Abstract

Mesh：

Year:  2016        PMID： 26711107     DOI： 10.1038/ng.3445

Source DB:  PubMed          Journal:  Nat Genet        ISSN： 1061-4036            Impact factor:   38.330


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  10 in total

1.  Frequent genomic structural alterations at HPV insertion sites in cervical carcinoma.

Authors:  Martine Peter; Nicolas Stransky; Jérôme Couturier; Philippe Hupé; Emmanuel Barillot; Patricia de Cremoux; Paul Cottu; Francois Radvanyi; Xavier Sastre-Garau
Journal:  J Pathol       Date:  2010-07       Impact factor: 7.996

2.  Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism.

Authors:  Zheng Hu; Da Zhu; Wei Wang; Weiyang Li; Wenlong Jia; Xi Zeng; Wencheng Ding; Lan Yu; Xiaoli Wang; Liming Wang; Hui Shen; Changlin Zhang; Hongjie Liu; Xiao Liu; Yi Zhao; Xiaodong Fang; Shuaicheng Li; Wei Chen; Tang Tang; Aisi Fu; Zou Wang; Gang Chen; Qinglei Gao; Shuang Li; Ling Xi; Changyu Wang; Shujie Liao; Xiangyi Ma; Peng Wu; Kezhen Li; Shixuan Wang; Jianfeng Zhou; Jun Wang; Xun Xu; Hui Wang; Ding Ma
Journal:  Nat Genet       Date:  2015-01-12       Impact factor: 38.330

3.  The genomic landscape of polymorphic human nuclear mitochondrial insertions.

Authors:  Gargi Dayama; Sarah B Emery; Jeffrey M Kidd; Ryan E Mills
Journal:  Nucleic Acids Res       Date:  2014-10-27       Impact factor: 16.971

4.  Landscape of genomic alterations in cervical carcinomas.

Authors:  Akinyemi I Ojesina; Lee Lichtenstein; Samuel S Freeman; Chandra Sekhar Pedamallu; Ivan Imaz-Rosshandler; Trevor J Pugh; Andrew D Cherniack; Lauren Ambrogio; Kristian Cibulskis; Bjørn Bertelsen; Sandra Romero-Cordoba; Victor Treviño; Karla Vazquez-Santillan; Alberto Salido Guadarrama; Alexi A Wright; Mara W Rosenberg; Fujiko Duke; Bethany Kaplan; Rui Wang; Elizabeth Nickerson; Heather M Walline; Michael S Lawrence; Chip Stewart; Scott L Carter; Aaron McKenna; Iram P Rodriguez-Sanchez; Magali Espinosa-Castilla; Kathrine Woie; Line Bjorge; Elisabeth Wik; Mari K Halle; Erling A Hoivik; Camilla Krakstad; Nayeli Belem Gabiño; Gabriela Sofia Gómez-Macías; Lezmes D Valdez-Chapa; María Lourdes Garza-Rodríguez; German Maytorena; Jorge Vazquez; Carlos Rodea; Adrian Cravioto; Maria L Cortes; Heidi Greulich; Christopher P Crum; Donna S Neuberg; Alfredo Hidalgo-Miranda; Claudia Rangel Escareno; Lars A Akslen; Thomas E Carey; Olav K Vintermyr; Stacey B Gabriel; Hugo A Barrera-Saldaña; Jorge Melendez-Zajgla; Gad Getz; Helga B Salvesen; Matthew Meyerson
Journal:  Nature       Date:  2013-12-25       Impact factor: 49.962

5.  Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma.

Authors:  Wing-Kin Sung; Hancheng Zheng; Shuyu Li; Ronghua Chen; Xiao Liu; Yingrui Li; Nikki P Lee; Wah H Lee; Pramila N Ariyaratne; Chandana Tennakoon; Fabianus H Mulawadi; Kwong F Wong; Angela M Liu; Ronnie T Poon; Sheung Tat Fan; Kwong L Chan; Zhuolin Gong; Yujie Hu; Zhao Lin; Guan Wang; Qinghui Zhang; Thomas D Barber; Wen-Chi Chou; Amit Aggarwal; Ke Hao; Wei Zhou; Chunsheng Zhang; James Hardwick; Carolyn Buser; Jiangchun Xu; Zhengyan Kan; Hongyue Dai; Mao Mao; Christoph Reinhard; Jun Wang; John M Luk
Journal:  Nat Genet       Date:  2012-05-27       Impact factor: 38.330

6.  RAF gene fusion breakpoints in pediatric brain tumors are characterized by significant enrichment of sequence microhomology.

Authors:  Andrew R J Lawson; Guy F L Hindley; Tim Forshew; Ruth G Tatevossian; Gabriel A Jamie; Gavin P Kelly; Geoffrey A Neale; Jing Ma; Tania A Jones; David W Ellison; Denise Sheer
Journal:  Genome Res       Date:  2011-03-10       Impact factor: 9.043

7.  HIVID: an efficient method to detect HBV integration using low coverage sequencing.

Authors:  Weiyang Li; Xi Zeng; Nikki P Lee; Xiao Liu; Shengpei Chen; Bing Guo; Shang Yi; Xuehan Zhuang; Fang Chen; Guan Wang; Ronnie T Poon; Sheung Tat Fan; Mao Mao; Yingrui Li; Songgang Li; Jun Wang; Xun Xu; Hui Jiang; Xiuqing Zhang
Journal:  Genomics       Date:  2013-07-15       Impact factor: 5.736

8.  Diverse mechanisms of somatic structural variations in human cancer genomes.

Authors:  Lixing Yang; Lovelace J Luquette; Nils Gehlenborg; Ruibin Xi; Psalm S Haseley; Chih-Heng Hsieh; Chengsheng Zhang; Xiaojia Ren; Alexei Protopopov; Lynda Chin; Raju Kucherlapati; Charles Lee; Peter J Park
Journal:  Cell       Date:  2013-05-09       Impact factor: 41.582

9.  Filtering duplicate reads from 454 pyrosequencing data.

Authors:  Susanne Balzer; Ketil Malde; Markus A Grohme; Inge Jonassen
Journal:  Bioinformatics       Date:  2013-02-01       Impact factor: 6.937

10.  Alternative-NHEJ is a mechanistically distinct pathway of mammalian chromosome break repair.

Authors:  Nicole Bennardo; Anita Cheng; Nick Huang; Jeremy M Stark
Journal:  PLoS Genet       Date:  2008-06-27       Impact factor: 6.020
  10 in total

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