Literature DB >> 26710335

Ontology Alignment Repair through Modularization and Confidence-Based Heuristics.

Emanuel Santos1, Daniel Faria2, Catia Pesquita1,2, Francisco M Couto1,2.   

Abstract

Ontology Matching aims at identifying a set of semantic correspondences, called an alignment, between related ontologies. In recent years, there has been a growing interest in efficient and effective matching methods for large ontologies. However, alignments produced for large ontologies are often logically incoherent. It was only recently that the use of repair techniques to improve the coherence of ontology alignments began to be explored. This paper presents a novel modularization technique for ontology alignment repair which extracts fragments of the input ontologies that only contain the necessary classes and relations to resolve all detectable incoherences. The paper presents also an alignment repair algorithm that uses a global repair strategy to minimize both the degree of incoherence and the number of mappings removed from the alignment, while overcoming the scalability problem by employing the proposed modularization technique. Our evaluation shows that our modularization technique produces significantly small fragments of the ontologies and that our repair algorithm produces more complete alignments than other current alignment repair systems, while obtaining an equivalent degree of incoherence. Additionally, we also present a variant of our repair algorithm that makes use of the confidence values of the mappings to improve alignment repair. Our repair algorithm was implemented as part of AgreementMakerLight, a free and open-source ontology matching system.

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Mesh:

Year:  2015        PMID: 26710335      PMCID: PMC4692440          DOI: 10.1371/journal.pone.0144807

Source DB:  PubMed          Journal:  PLoS One        ISSN: 1932-6203            Impact factor:   3.240


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2.  Improving the interoperability of biomedical ontologies with compound alignments.

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Journal:  J Biomed Semantics       Date:  2018-01-09

3.  Matching disease and phenotype ontologies in the ontology alignment evaluation initiative.

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Journal:  J Biomed Semantics       Date:  2017-12-02

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  4 in total

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