| Literature DB >> 26709978 |
Bijay Kumar Behera1, Vishwamitra Singh Baisvar1, Kavita Kumari1, Ajaya Kumar Rout1, Sudip Pakrashi1, Prasenjet Paria1, A R Rao2, Anil Rai2.
Abstract
In the present study, the complete mitochondrial genome sequence of Anabas testudineusis reported using PGM sequencer (Ion Torrent, Life Technologies, La Jolla, CA). The complete mitogenome of climbing perch, A. testudineusis obtained by the de novo sequences assembly of genomic reads using the Torrent Mapping Alignment Program (TMAP), which is 16 603 bp in length. The mitogenome of A. testudineus composed of 13 protein- coding genes, two rRNA, and 22 tRNAs. Here, 20 tRNAs genes showed typical clover leaf model, and D-Loop as the control region along with gene order and organization, being closely similar to Osphronemidae and most of other Perciformes fish mitogenomes of NCBI databases. The mitogenome in the present study has 99% similarity to the complete mitogenome sequence of earlier reported A. testudineus. The phylogenetic analysis of Anabantidae depicted that their mitogenomes are closely related to each other. The complete mitogenome sequence of A. testudineus would be helpful in understanding the population genetics, phylogenetics, and evolution of Anabantidae.Entities:
Keywords: Anabantidae; Anabas testudineus; mitogenome; next-generation sequencing
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Year: 2015 PMID: 26709978 DOI: 10.3109/19401736.2015.1115490
Source DB: PubMed Journal: Mitochondrial DNA A DNA Mapp Seq Anal ISSN: 2470-1394 Impact factor: 1.514