Literature DB >> 26709541

The complete chloroplast genome of two Brassica species, Brassica nigra and B. Oleracea.

Young-Joo Seol1, Kyunghee Kim2,3, Sang-Ho Kang1, Sampath Perumal2, Jonghoon Lee2, Chang-Kug Kim1.   

Abstract

The two Brassica species, Brassica nigra and Brassica oleracea, are important agronomic crops. The chloroplast genome sequences were generated by de novo assembly using whole genome next-generation sequences. The chloroplast genomes of B. nigra and B. oleracea were 153 633 bp and 153 366 bp in size, respectively, and showed conserved typical chloroplast structure. The both chloroplast genomes contained a total of 114 genes including 80 protein-coding genes, 30 tRNA genes, and 4 rRNA genes. Phylogenetic analysis revealed that B. oleracea is closely related to B. rapa and B. napus but B. nigra is more diverse than the neighbor species Raphanus sativus.

Entities:  

Keywords:  B. nigra; B. oleracea; chloroplast; genome sequence

Mesh：

Substances：

Year:  2015        PMID： 26709541     DOI： 10.3109/19401736.2015.1115493

Source DB:  PubMed          Journal:  Mitochondrial DNA A DNA Mapp Seq Anal        ISSN： 2470-1394            Impact factor:   1.514


  6 in total

1.  A large-scale population based organelle pan-genomes construction and phylogeny analysis reveal the genetic diversity and the evolutionary origins of chloroplast and mitochondrion in Brassica napus L.

Authors:  Honfang Liu; Wei Zhao; Wei Hua; Jing Liu
Journal:  BMC Genomics       Date:  2022-04-30       Impact factor: 4.547

2.  Chloroplast genomes of Arabidopsis halleri ssp. gemmifera and Arabidopsis lyrata ssp. petraea: Structures and comparative analysis.

Authors:  Sajjad Asaf; Abdul Latif Khan; Muhammad Aaqil Khan; Muhammad Waqas; Sang-Mo Kang; Byung-Wook Yun; In-Jung Lee
Journal:  Sci Rep       Date:  2017-08-08       Impact factor: 4.379

3.  Exploring the History of Chloroplast Capture in Arabis Using Whole Chloroplast Genome Sequencing.

Authors:  Akira Kawabe; Hiroaki Nukii; Hazuka Y Furihata
Journal:  Int J Mol Sci       Date:  2018-02-18       Impact factor: 5.923

4.  Complete chloroplast genome features and phylogenetic analysis of Eruca sativa (Brassicaceae).

Authors:  Bin Zhu; Fang Qian; Yunfeng Hou; Weicheng Yang; Mengxian Cai; Xiaoming Wu
Journal:  PLoS One       Date:  2021-03-12       Impact factor: 3.240

5.  Complete chloroplast genome sequence of turnip (Brassica rapa. ssp. rapa): genome structure and phylogenetic analysis.

Authors:  Rui Han; Minyu Tian; Guangnan Zhang; Dengkui Shao; Yanjing Ren
Journal:  Mitochondrial DNA B Resour       Date:  2020-10-09       Impact factor: 0.658

6.  Re-exploration of U's Triangle Brassica Species Based on Chloroplast Genomes and 45S nrDNA Sequences.

Authors:  Chang-Kug Kim; Young-Joo Seol; Sampath Perumal; Jonghoon Lee; Nomar Espinosa Waminal; Murukarthick Jayakodi; Sang-Choon Lee; Seungwoo Jin; Beom-Soon Choi; Yeisoo Yu; Ho-Cheol Ko; Ji-Weon Choi; Kyoung-Yul Ryu; Seong-Han Sohn; Isobel Parkin; Tae-Jin Yang
Journal:  Sci Rep       Date:  2018-05-09       Impact factor: 4.379
  6 in total

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