Literature DB >> 26709496

The disordered hypervariable region and the folded catalytic domain of oncogenic K-Ras4B partner in phospholipid binding.

Avik Banerjee1, Hyunbum Jang2, Ruth Nussinov3, Vadim Gaponenko4.   

Abstract

The C-terminal hypervariable region (HVR) of the splice variant KRAS4B is disordered. Classically, the role of the post-translationally-modified HVR is to navigate Ras in the cell and to anchor it in localized plasma membrane regions. Here, we propose additional regulatory roles, including auto-inhibition by shielding the effector binding site in the GDP-bound state and release upon GTP binding and in the presence of certain oncogenic mutations. The released HVR can interact with calmodulin. We show that oncogenic mutations (G12V/G12D) modulate the HVR-phospholipid binding specificity, resulting in preferential interactions with phosphatidic acid. The shifts in the conformational preferences and binding specificity in the disordered state exemplify the critical role of the unstructured tail of K-Ras4B in cancer.
Copyright © 2015 Elsevier Ltd. All rights reserved.

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Year:  2015        PMID: 26709496      PMCID: PMC4785042          DOI: 10.1016/j.sbi.2015.11.010

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  56 in total

Review 1.  Ras isoform-specific signaling: location, location, location.

Authors:  A Wolfman
Journal:  Sci STKE       Date:  2001-08-21

2.  The Ras G Domain Lacks the Intrinsic Propensity to Form Dimers.

Authors:  Elizaveta A Kovrigina; Azamat R Galiakhmetov; Evgenii L Kovrigin
Journal:  Biophys J       Date:  2015-09-01       Impact factor: 4.033

3.  NMR characterization of full-length farnesylated and non-farnesylated H-Ras and its implications for Raf activation.

Authors:  Roopa Thapar; Jason G Williams; Sharon L Campbell
Journal:  J Mol Biol       Date:  2004-11-05       Impact factor: 5.469

4.  Biochemical and Structural Analysis of Common Cancer-Associated KRAS Mutations.

Authors:  John C Hunter; Anuj Manandhar; Martin A Carrasco; Deepak Gurbani; Sudershan Gondi; Kenneth D Westover
Journal:  Mol Cancer Res       Date:  2015-06-02       Impact factor: 5.852

5.  CELL SIGNALING. Lipids link ion channels and cancer.

Authors:  Alessio Accardi
Journal:  Science       Date:  2015-08-21       Impact factor: 47.728

6.  SIGNAL TRANSDUCTION. Membrane potential modulates plasma membrane phospholipid dynamics and K-Ras signaling.

Authors:  Yong Zhou; Ching-On Wong; Kwang-jin Cho; Dharini van der Hoeven; Hong Liang; Dhananiay P Thakur; Jialie Luo; Milos Babic; Konrad E Zinsmaier; Michael X Zhu; Hongzhen Hu; Kartik Venkatachalam; John F Hancock
Journal:  Science       Date:  2015-08-21       Impact factor: 47.728

7.  Translocation of Ki-ras p21 between membrane and cytoplasm by smg GDS.

Authors:  M Kawamura; K Kaibuchi; K Kishi; Y Takai
Journal:  Biochem Biophys Res Commun       Date:  1993-02-15       Impact factor: 3.575

8.  Nucleophosmin and nucleolin regulate K-Ras plasma membrane interactions and MAPK signal transduction.

Authors:  Kerry L Inder; Chiyan Lau; Dorothy Loo; Natasha Chaudhary; Andrew Goodall; Sally Martin; Alun Jones; Dharini van der Hoeven; Robert G Parton; Michelle M Hill; John F Hancock
Journal:  J Biol Chem       Date:  2009-08-06       Impact factor: 5.157

9.  Phospholipase D2-generated phosphatidic acid couples EGFR stimulation to Ras activation by Sos.

Authors:  Chen Zhao; Guangwei Du; Karl Skowronek; Michael A Frohman; Dafna Bar-Sagi
Journal:  Nat Cell Biol       Date:  2007-05-07       Impact factor: 28.824

10.  A comprehensive survey of Ras mutations in cancer.

Authors:  Ian A Prior; Paul D Lewis; Carla Mattos
Journal:  Cancer Res       Date:  2012-05-15       Impact factor: 12.701

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  23 in total

Review 1.  Drugging Ras GTPase: a comprehensive mechanistic and signaling structural view.

Authors:  Shaoyong Lu; Hyunbum Jang; Shuo Gu; Jian Zhang; Ruth Nussinov
Journal:  Chem Soc Rev       Date:  2016-07-11       Impact factor: 54.564

2.  The structural basis for Ras activation of PI3Kα lipid kinase.

Authors:  Mingzhen Zhang; Hyunbum Jang; Ruth Nussinov
Journal:  Phys Chem Chem Phys       Date:  2019-06-05       Impact factor: 3.676

3.  Raf-1 Cysteine-Rich Domain Increases the Affinity of K-Ras/Raf at the Membrane, Promoting MAPK Signaling.

Authors:  Shuai Li; Hyunbum Jang; Jian Zhang; Ruth Nussinov
Journal:  Structure       Date:  2018-02-08       Impact factor: 5.006

Review 4.  Oncogenic Ras Isoforms Signaling Specificity at the Membrane.

Authors:  Ruth Nussinov; Chung-Jung Tsai; Hyunbum Jang
Journal:  Cancer Res       Date:  2017-12-22       Impact factor: 12.701

Review 5.  Intrinsic protein disorder in oncogenic KRAS signaling.

Authors:  Ruth Nussinov; Hyunbum Jang; Chung-Jung Tsai; Tsung-Jen Liao; Shuai Li; David Fushman; Jian Zhang
Journal:  Cell Mol Life Sci       Date:  2017-06-08       Impact factor: 9.261

6.  K-Ras G-domain binding with signaling lipid phosphatidylinositol (4,5)-phosphate (PIP2): membrane association, protein orientation, and function.

Authors:  Shufen Cao; Stacey Chung; SoonJeung Kim; Zhenlu Li; Danny Manor; Matthias Buck
Journal:  J Biol Chem       Date:  2019-02-21       Impact factor: 5.157

Review 7.  Calmodulin and PI3K Signaling in KRAS Cancers.

Authors:  Ruth Nussinov; Guanqiao Wang; Chung-Jung Tsai; Hyunbum Jang; Shaoyong Lu; Avik Banerjee; Jian Zhang; Vadim Gaponenko
Journal:  Trends Cancer       Date:  2017-02-18

8.  PDEδ Binding to Ras Isoforms Provides a Route to Proper Membrane Localization.

Authors:  Serena Muratcioglu; Hyunbum Jang; Attila Gursoy; Ozlem Keskin; Ruth Nussinov
Journal:  J Phys Chem B       Date:  2017-06-07       Impact factor: 2.991

9.  Phosphorylated Calmodulin Promotes PI3K Activation by Binding to the SH2 Domains.

Authors:  Mingzhen Zhang; Hyunbum Jang; Vadim Gaponenko; Ruth Nussinov
Journal:  Biophys J       Date:  2017-11-07       Impact factor: 4.033

10.  Calmodulin (CaM) Activates PI3Kα by Targeting the "Soft" CaM-Binding Motifs in Both the nSH2 and cSH2 Domains of p85α.

Authors:  Mingzhen Zhang; Zhigang Li; Guanqiao Wang; Hyunbum Jang; David B Sacks; Jian Zhang; Vadim Gaponenko; Ruth Nussinov
Journal:  J Phys Chem B       Date:  2018-08-08       Impact factor: 2.991

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