Literature DB >> 26707808

Synergism of proteomics and mRNA sequencing for enzyme discovery.

Lukas Sturmberger1, Paal W Wallace2, Anton Glieder3, Ruth Birner-Gruenberger4.   

Abstract

Enzyme catalyzed processes are increasingly complementing chemical manufacturing as new enzymes are being discovered. Although, many industrially applied biocatalysts have been identified by functional screenings technological advances in the omics fields have created a different path to access novelty. Here we describe how omics technologies, especially proteomics and transcriptomics, can complement each other in the aim of finding new enzymatic functions. Special emphasis is laid on how mRNA sequencing Zcan improve proteomic experiments by allowing the generation of high quality protein sequence databases, which subsequently facilitates protein identification.
Copyright © 2015 The Authors. Published by Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Biotechnology; Database; Enzyme discovery; Proteomics; Transcriptomics

Mesh:

Substances:

Year:  2015        PMID: 26707808     DOI: 10.1016/j.jbiotec.2015.12.015

Source DB:  PubMed          Journal:  J Biotechnol        ISSN: 0168-1656            Impact factor:   3.595


  5 in total

Review 1.  Microbial Keratinases: Enzymes with Promising Biotechnological Applications.

Authors:  Beti Vidmar; Maša Vodovnik
Journal:  Food Technol Biotechnol       Date:  2018-09       Impact factor: 3.918

Review 2.  Decoding the ocean's microbiological secrets for marine enzyme biodiscovery.

Authors:  Manuel Ferrer; Celia Méndez-García; Rafael Bargiela; Jennifer Chow; Sandra Alonso; Antonio García-Moyano; Gro E K Bjerga; Ida H Steen; Tatjana Schwabe; Charlotte Blom; Jan Vester; Andrea Weckbecker; Patrick Shahgaldian; Carla C C R de Carvalho; Rolandas Meskys; Giulio Zanaroli; Frank O Glöckner; Antonio Fernández-Guerra; Siva Thambisetty; Fernando de la Calle; Olga V Golyshina; Michail M Yakimov; Karl-Erich Jaeger; Alexander F Yakunin; Wolfgang R Streit; Oonagh McMeel; Jan-Bart Calewaert; Nathalie Tonné; Peter N Golyshin
Journal:  FEMS Microbiol Lett       Date:  2019-01-01       Impact factor: 2.742

3.  PpEst is a novel PBAT degrading polyesterase identified by proteomic screening of Pseudomonas pseudoalcaligenes.

Authors:  Paal W Wallace; Karolina Haernvall; Doris Ribitsch; Sabine Zitzenbacher; Matthias Schittmayer; Georg Steinkellner; Karl Gruber; Georg M Guebitz; Ruth Birner-Gruenberger
Journal:  Appl Microbiol Biotechnol       Date:  2016-11-21       Impact factor: 5.560

4.  The Holo-Transcriptome of the Zoantharian Protopalythoa variabilis (Cnidaria: Anthozoa): A Plentiful Source of Enzymes for Potential Application in Green Chemistry, Industrial and Pharmaceutical Biotechnology.

Authors:  Jean-Étienne R L Morlighem; Chen Huang; Qiwen Liao; Paula Braga Gomes; Carlos Daniel Pérez; Álvaro Rossan de Brandão Prieto-da-Silva; Simon Ming-Yuen Lee; Gandhi Rádis-Baptista
Journal:  Mar Drugs       Date:  2018-06-13       Impact factor: 5.118

Review 5.  Enzymes from Marine Polar Regions and Their Biotechnological Applications.

Authors:  Stefano Bruno; Daniela Coppola; Guido di Prisco; Daniela Giordano; Cinzia Verde
Journal:  Mar Drugs       Date:  2019-09-23       Impact factor: 5.118

  5 in total

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