Literature DB >> 26704970

Coexistence of coil and globule domains within a single confined DNA chain.

Baeckkyoung Sung1, Amélie Leforestier1, Françoise Livolant2.   

Abstract

The highly charged DNA chain may be either in an extended conformation, the coil, or condensed into a highly dense and ordered structure, the toroid. The transition, also called collapse of the chain, can be triggered in different ways, for example by changing the ionic conditions of the solution. We observe individual DNA molecules one by one, kept separated and confined inside a protein shell (the envelope of a bacterial virus, 80 nm in diameter). For subcritical concentrations of spermine (4+), part of the DNA is condensed and organized in a toroid and the other part of the chain remains uncondensed around. Two states coexist along the same DNA chain. These 'hairy' globules are imaged by cryo-electron microscopy. We describe the global conformation of the chain and the local ordering of DNA segments inside the toroid.
© The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research.

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Year:  2015        PMID: 26704970      PMCID: PMC4756835          DOI: 10.1093/nar/gkv1494

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  28 in total

1.  Protamine-induced condensation and decondensation of the same DNA molecule.

Authors:  L R Brewer; M Corzett; R Balhorn
Journal:  Science       Date:  1999-10-01       Impact factor: 47.728

2.  Cryoelectron microscopy of lambda phage DNA condensates in vitreous ice: the fine structure of DNA toroids.

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Journal:  Proc Natl Acad Sci U S A       Date:  2001-12-04       Impact factor: 11.205

3.  Rings-on-a-string chain structure in DNA.

Authors:  Naomi Miyazawa; Takahiro Sakaue; Kenichi Yoshikawa; Raoul Zana
Journal:  J Chem Phys       Date:  2005-01-22       Impact factor: 3.488

4.  Folding transition of a single semiflexible polyelectrolyte chain through toroidal bundling of loop structures.

Authors:  Takafumi Iwaki; Naoko Makita; Kenichi Yoshikawa
Journal:  J Chem Phys       Date:  2008-08-14       Impact factor: 3.488

5.  The bacteriophage genome undergoes a succession of intracapsid phase transitions upon DNA ejection.

Authors:  Amélie Leforestier; Françoise Livolant
Journal:  J Mol Biol       Date:  2009-11-26       Impact factor: 5.469

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Journal:  Biochemistry       Date:  1996-11-12       Impact factor: 3.162

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Authors:  J Widom; R L Baldwin
Journal:  Biopolymers       Date:  1983-06       Impact factor: 2.505

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Authors:  D K Chattoraj; L C Gosule; A Schellman
Journal:  J Mol Biol       Date:  1978-05-25       Impact factor: 5.469

9.  Light-scattering study of DNA condensation: competition between collapse and aggregation.

Authors:  C B Post; B H Zimm
Journal:  Biopolymers       Date:  1982-11       Impact factor: 2.505

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Authors:  C B Post; B H Zimm
Journal:  Biopolymers       Date:  1982-11       Impact factor: 2.505

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  2 in total

1.  Local structure of DNA toroids reveals curvature-dependent intermolecular forces.

Authors:  Luca Barberi; Françoise Livolant; Amélie Leforestier; Martin Lenz
Journal:  Nucleic Acids Res       Date:  2021-04-19       Impact factor: 16.971

2.  Agglomeration structure of superparamagnetic nanoparticles in a nematic liquid crystal medium: Image analysis datasets based on cryo-electron microscopy and polarised optical microscopy techniques.

Authors:  Baeckkyoung Sung; Leon Abelmann
Journal:  Data Brief       Date:  2021-01-11
  2 in total

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