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Literature DB >> 26704455

Elevating The Status of Code in Ecology.

K A S Mislan¹, Jeffrey M Heer², Ethan P White³.

Abstract

Code is increasingly central to ecological research but often remains unpublished and insufficiently recognized. Making code available allows analyses to be more easily reproduced and can facilitate research by other scientists. We evaluate journal handling of code, discuss barriers to its publication, and suggest approaches for promoting and archiving code.

Entities: Disease

Keywords: data; publish; reproducibility; software

Mesh：

Year: 2015 PMID： 26704455 DOI： 10.1016/j.tree.2015.11.006

Source DB: PubMed Journal: Trends Ecol Evol ISSN： 0169-5347 Impact factor: 17.712

Keyword Cloud
Cited

9 in total

1. Iterative near-term ecological forecasting: Needs, opportunities, and challenges.

Authors: Michael C Dietze; Andrew Fox; Lindsay M Beck-Johnson; Julio L Betancourt; Mevin B Hooten; Catherine S Jarnevich; Timothy H Keitt; Melissa A Kenney; Christine M Laney; Laurel G Larsen; Henry W Loescher; Claire K Lunch; Bryan C Pijanowski; James T Randerson; Emily K Read; Andrew T Tredennick; Rodrigo Vargas; Kathleen C Weathers; Ethan P White
Journal: Proc Natl Acad Sci U S A Date: 2018-01-30 Impact factor: 11.205

2. MoveApps: a serverless no-code analysis platform for animal tracking data.

Authors: Andrea Kölzsch; Sarah C Davidson; Dominik Gauggel; Clemens Hahn; Julian Hirt; Roland Kays; Ilona Lang; Ashley Lohr; Benedict Russell; Anne K Scharf; Gabriel Schneider; Candace M Vinciguerra; Martin Wikelski; Kamran Safi
Journal: Mov Ecol Date: 2022-07-18 Impact factor: 5.253

3. BioVeL: a virtual laboratory for data analysis and modelling in biodiversity science and ecology.

Authors: Alex R Hardisty; Finn Bacall; Niall Beard; Maria-Paula Balcázar-Vargas; Bachir Balech; Zoltán Barcza; Sarah J Bourlat; Renato De Giovanni; Yde de Jong; Francesca De Leo; Laura Dobor; Giacinto Donvito; Donal Fellows; Antonio Fernandez Guerra; Nuno Ferreira; Yuliya Fetyukova; Bruno Fosso; Jonathan Giddy; Carole Goble; Anton Güntsch; Robert Haines; Vera Hernández Ernst; Hannes Hettling; Dóra Hidy; Ferenc Horváth; Dóra Ittzés; Péter Ittzés; Andrew Jones; Renzo Kottmann; Robert Kulawik; Sonja Leidenberger; Päivi Lyytikäinen-Saarenmaa; Cherian Mathew; Norman Morrison; Aleksandra Nenadic; Abraham Nieva de la Hidalga; Matthias Obst; Gerard Oostermeijer; Elisabeth Paymal; Graziano Pesole; Salvatore Pinto; Axel Poigné; Francisco Quevedo Fernandez; Monica Santamaria; Hannu Saarenmaa; Gergely Sipos; Karl-Heinz Sylla; Marko Tähtinen; Saverio Vicario; Rutger Aldo Vos; Alan R Williams; Pelin Yilmaz
Journal: BMC Ecol Date: 2016-10-20 Impact factor: 2.964

Elevating The Status of Code in Ecology.

1. Iterative near-term ecological forecasting: Needs, opportunities, and challenges.

2. MoveApps: a serverless no-code analysis platform for animal tracking data.

3. BioVeL: a virtual laboratory for data analysis and modelling in biodiversity science and ecology.

4. Striving for transparent and credible research: practical guidelines for behavioral ecologists.

5. Metaresearch for Evaluating Reproducibility in Ecology and Evolution.

6. Low availability of code in ecology: A call for urgent action.

7. Ten simple rules for reporting information on species interactions.

8. A simple kit to use computational notebooks for more openness, reproducibility, and productivity in research.

9. Questionable research practices in ecology and evolution.