Literature DB >> 26704082

Lateral Thinking: How Histone Modifications Regulate Gene Expression.

Moyra Lawrence1, Sylvain Daujat1, Robert Schneider2.   

Abstract

The DNA of each cell is wrapped around histone octamers, forming so-called 'nucleosomal core particles'. These histone proteins have tails that project from the nucleosome and many residues in these tails can be post-translationally modified, influencing all DNA-based processes, including chromatin compaction, nucleosome dynamics, and transcription. In contrast to those present in histone tails, modifications in the core regions of the histones had remained largely uncharacterised until recently, when some of these modifications began to be analysed in detail. Overall, recent work has shown that histone core modifications can not only directly regulate transcription, but also influence processes such as DNA repair, replication, stemness, and changes in cell state. In this review, we focus on the most recent developments in our understanding of histone modifications, particularly those on the lateral surface of the nucleosome. This region is in direct contact with the DNA and is formed by the histone cores. We suggest that these lateral surface modifications represent a key insight into chromatin regulation in the cell. Therefore, lateral surface modifications form a key area of interest and a focal point of ongoing study in epigenetics.
Copyright © 2015 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  histone; lateral surface; modification; nucleosome; remodelling; transcriptional regulation

Mesh:

Substances:

Year:  2015        PMID: 26704082     DOI: 10.1016/j.tig.2015.10.007

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  219 in total

1.  Lens differentiation is characterized by stage-specific changes in chromatin accessibility correlating with differentiation state-specific gene expression.

Authors:  Joshua Disatham; Daniel Chauss; Rifah Gheyas; Lisa Brennan; David Blanco; Lauren Daley; A Sue Menko; Marc Kantorow
Journal:  Dev Biol       Date:  2019-05-25       Impact factor: 3.582

2.  Self-Reporting Transposons Enable Simultaneous Readout of Gene Expression and Transcription Factor Binding in Single Cells.

Authors:  Arnav Moudgil; Michael N Wilkinson; Xuhua Chen; June He; Alexander J Cammack; Michael J Vasek; Tomás Lagunas; Zongtai Qi; Matthew A Lalli; Chuner Guo; Samantha A Morris; Joseph D Dougherty; Robi D Mitra
Journal:  Cell       Date:  2020-07-24       Impact factor: 41.582

Review 3.  Developmental underpinnings of spermatogonial stem cell establishment.

Authors:  Nathan C Law; Jon M Oatley
Journal:  Andrology       Date:  2020-05-24       Impact factor: 3.842

4.  The nucleosome acidic patch directly interacts with subunits of the Paf1 and FACT complexes and controls chromatin architecture in vivo.

Authors:  Christine E Cucinotta; A Elizabeth Hildreth; Brendan M McShane; Margaret K Shirra; Karen M Arndt
Journal:  Nucleic Acids Res       Date:  2019-09-19       Impact factor: 16.971

Review 5.  Genetic and epigenetic control of adipose development.

Authors:  Olga Gulyaeva; Jon Dempersmier; Hei Sook Sul
Journal:  Biochim Biophys Acta Mol Cell Biol Lipids       Date:  2018-04-25       Impact factor: 4.698

Review 6.  Epigenetic Regulation of the Thermogenic Adipose Program.

Authors:  Audrey Sambeat; Olga Gulyaeva; Jon Dempersmier; Hei Sook Sul
Journal:  Trends Endocrinol Metab       Date:  2016-09-28       Impact factor: 12.015

Review 7.  The epigenome in Alzheimer's disease: current state and approaches for a new path to gene discovery and understanding disease mechanism.

Authors:  Hans-Ulrich Klein; David A Bennett; Philip L De Jager
Journal:  Acta Neuropathol       Date:  2016-08-29       Impact factor: 17.088

8.  The histone H4 basic patch regulates SAGA-mediated H2B deubiquitination and histone acetylation.

Authors:  Hashem A Meriesh; Andrew M Lerner; Mahesh B Chandrasekharan; Brian D Strahl
Journal:  J Biol Chem       Date:  2020-04-03       Impact factor: 5.157

Review 9.  An Epigenetic Journey: Epstein-Barr Virus Transcribes Chromatinized and Subsequently Unchromatinized Templates during Its Lytic Cycle.

Authors:  Adityarup Chakravorty; Bill Sugden; Eric C Johannsen
Journal:  J Virol       Date:  2019-04-03       Impact factor: 5.103

Review 10.  The role of ARID1B, a BAF chromatin remodeling complex subunit, in neural development and behavior.

Authors:  Jeffrey J Moffat; Eui-Man Jung; Minhan Ka; Amanda L Smith; Byeong Tak Jeon; Gijs W E Santen; Woo-Yang Kim
Journal:  Prog Neuropsychopharmacol Biol Psychiatry       Date:  2018-08-24       Impact factor: 5.067

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