Literature DB >> 26701823

Cohesin's role in pluripotency and reprogramming.

Preksha Gupta1, Thais Lavagnolli1, Hegias Mira-Bontenbal1, Amanda G Fisher1, Matthias Merkenschlager1.   

Abstract

Cohesin is required for ES cell self-renewal and iPS-mediated reprogramming of somatic cells. This may indicate a special role for cohesin in the regulation of pluripotency genes, perhaps by mediating long-range chromosomal interactions between gene regulatory elements. However, cohesin is also essential for genome integrity, and its depletion from cycling cells induces DNA damage responses. Hence, the failure of cohesin-depleted cells to establish or maintain pluripotency gene expression could be explained by a loss of long-range interactions or by DNA damage responses that undermine pluripotency gene expression. In recent work we began to disentangle these possibilities by analyzing reprogramming in the absence of cell division. These experiments showed that cohesin was not specifically required for reprogramming, and that the expression of most pluripotency genes was maintained when ES cells were acutely depleted of cohesin. Here we take this analysis to its logical conclusion by demonstrating that deliberately inflicted DNA damage - and the DNA damage that results from proliferation in the absence of cohesin - can directly interfere with pluripotency and reprogramming. The role of cohesin in pluripotency and reprogramming may therefore be best explained by essential cohesin functions in the cell cycle.

Entities:  

Keywords:  cell cycle; cohesin; enhancer-promoter interactions; gene expression; pluripotency; reprogramming; stress

Mesh:

Substances:

Year:  2015        PMID: 26701823      PMCID: PMC4943700          DOI: 10.1080/15384101.2015.1128593

Source DB:  PubMed          Journal:  Cell Cycle        ISSN: 1551-4005            Impact factor:   4.534


  54 in total

1.  Chromosomal cohesin forms a ring.

Authors:  Stephan Gruber; Christian H Haering; Kim Nasmyth
Journal:  Cell       Date:  2003-03-21       Impact factor: 41.582

2.  Sister chromatid cohesion is required for postreplicative double-strand break repair in Saccharomyces cerevisiae.

Authors:  C Sjögren; K Nasmyth
Journal:  Curr Biol       Date:  2001-06-26       Impact factor: 10.834

3.  A genome-scale RNAi screen for Oct4 modulators defines a role of the Paf1 complex for embryonic stem cell identity.

Authors:  Li Ding; Maciej Paszkowski-Rogacz; Anja Nitzsche; Mikolaj Michal Slabicki; Anne-Kristin Heninger; Ingrid de Vries; Ralf Kittler; Magno Junqueira; Andrej Shevchenko; Herbert Schulz; Norbert Hubner; Michael Xavier Doss; Agapios Sachinidis; Juergen Hescheler; Roberto Iacone; Konstantinos Anastassiadis; A Francis Stewart; M Teresa Pisabarro; Antonio Caldarelli; Ina Poser; Mirko Theis; Frank Buchholz
Journal:  Cell Stem Cell       Date:  2009-04-02       Impact factor: 24.633

4.  Cell type specificity of chromatin organization mediated by CTCF and cohesin.

Authors:  Chunhui Hou; Ryan Dale; Ann Dean
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-02       Impact factor: 11.205

Review 5.  The 3D genome in transcriptional regulation and pluripotency.

Authors:  David U Gorkin; Danny Leung; Bing Ren
Journal:  Cell Stem Cell       Date:  2014-06-05       Impact factor: 24.633

6.  CTCF physically links cohesin to chromatin.

Authors:  Eric D Rubio; David J Reiss; Piri L Welcsh; Christine M Disteche; Galina N Filippova; Nitin S Baliga; Ruedi Aebersold; Jeffrey A Ranish; Anton Krumm
Journal:  Proc Natl Acad Sci U S A       Date:  2008-06-11       Impact factor: 11.205

7.  A role for cohesin in T-cell-receptor rearrangement and thymocyte differentiation.

Authors:  Vlad C Seitan; Bingtao Hao; Kikuë Tachibana-Konwalski; Thais Lavagnolli; Hegias Mira-Bontenbal; Karen E Brown; Grace Teng; Tom Carroll; Anna Terry; Katie Horan; Hendrik Marks; David J Adams; David G Schatz; Luis Aragon; Amanda G Fisher; Michael S Krangel; Kim Nasmyth; Matthias Merkenschlager
Journal:  Nature       Date:  2011-08-10       Impact factor: 49.962

8.  Metazoan Scc4 homologs link sister chromatid cohesion to cell and axon migration guidance.

Authors:  Vlad C Seitan; Peter Banks; Steve Laval; Nazia A Majid; Dale Dorsett; Amer Rana; Jim Smith; Alex Bateman; Sanja Krpic; Arnd Hostert; Robert A Rollins; Hediye Erdjument-Bromage; Paul Tempst; Claire Y Benard; Siegfried Hekimi; Sarah F Newbury; Tom Strachan
Journal:  PLoS Biol       Date:  2006-07       Impact factor: 8.029

9.  Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments.

Authors:  Vlad C Seitan; Andre J Faure; Ye Zhan; Rachel Patton McCord; Bryan R Lajoie; Elizabeth Ing-Simmons; Boris Lenhard; Luca Giorgetti; Edith Heard; Amanda G Fisher; Paul Flicek; Job Dekker; Matthias Merkenschlager
Journal:  Genome Res       Date:  2013-09-03       Impact factor: 9.043

10.  Heterokaryon-based reprogramming of human B lymphocytes for pluripotency requires Oct4 but not Sox2.

Authors:  Carlos F Pereira; Rémi Terranova; Natalie K Ryan; Joana Santos; Kelly J Morris; Wei Cui; Matthias Merkenschlager; Amanda G Fisher
Journal:  PLoS Genet       Date:  2008-09-05       Impact factor: 5.917

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  3 in total

Review 1.  The interdependence of gene-regulatory elements and the 3D genome.

Authors:  Marit W Vermunt; Di Zhang; Gerd A Blobel
Journal:  J Cell Biol       Date:  2018-11-15       Impact factor: 10.539

2.  Oplr16 serves as a novel chromatin factor to control stem cell fate by modulating pluripotency-specific chromosomal looping and TET2-mediated DNA demethylation.

Authors:  Lin Jia; Yichen Wang; Cong Wang; Zhonghua Du; Shilin Zhang; Xue Wen; Lei Zhou; Hui Li; Huiling Chen; Dan Li; Songling Zhang; Wei Li; Wei Xu; Andrew R Hoffman; Jiuwei Cui; Ji-Fan Hu
Journal:  Nucleic Acids Res       Date:  2020-04-17       Impact factor: 16.971

3.  A Loss of Function Screen of Epigenetic Modifiers and Splicing Factors during Early Stage of Cardiac Reprogramming.

Authors:  Yang Zhou; Sahar Alimohamadi; Li Wang; Ziqing Liu; Joseph B Wall; Chaoying Yin; Jiandong Liu; Li Qian
Journal:  Stem Cells Int       Date:  2018-03-18       Impact factor: 5.443

  3 in total

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