Literature DB >> 26701310

Synthetic biology and molecular genetics in non-conventional yeasts: Current tools and future advances.

James M Wagner1, Hal S Alper2.   

Abstract

Coupling the tools of synthetic biology with traditional molecular genetic techniques can enable the rapid prototyping and optimization of yeast strains. While the era of yeast synthetic biology began in the well-characterized model organism Saccharomyces cerevisiae, it is swiftly expanding to include non-conventional yeast production systems such as Hansenula polymorpha, Kluyveromyces lactis, Pichia pastoris, and Yarrowia lipolytica. These yeasts already have roles in the manufacture of vaccines, therapeutic proteins, food additives, and biorenewable chemicals, but recent synthetic biology advances have the potential to greatly expand and diversify their impact on biotechnology. In this review, we summarize the development of synthetic biological tools (including promoters and terminators) and enabling molecular genetics approaches that have been applied in these four promising alternative biomanufacturing platforms. An emphasis is placed on synthetic parts and genome editing tools. Finally, we discuss examples of synthetic tools developed in other organisms that can be adapted or optimized for these hosts in the near future.
Copyright © 2015 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  CRISPR; Cas9; Hansenula polymorpha; Kluyveromyces lactis; Pichia pastoris; Synthetic biology; Yarrowia lipolytica; Yeast

Mesh:

Year:  2015        PMID: 26701310     DOI: 10.1016/j.fgb.2015.12.001

Source DB:  PubMed          Journal:  Fungal Genet Biol        ISSN: 1087-1845            Impact factor:   3.495


  45 in total

1.  Improving ionic liquid tolerance in Saccharomyces cerevisiae through heterologous expression and directed evolution of an ILT1 homolog from Yarrowia lipolytica.

Authors:  Kevin B Reed; James M Wagner; Simon d'Oelsnitz; Joshua M Wiggers; Hal S Alper
Journal:  J Ind Microbiol Biotechnol       Date:  2019-08-19       Impact factor: 3.346

2.  Droplet-Based Microfluidic High-Throughput Screening of Enzyme Mutant Libraries Secreted by Yarrowia lipolytica.

Authors:  Thomas Beneyton; Tristan Rossignol
Journal:  Methods Mol Biol       Date:  2021

3.  CRISPR Interference and Activation to Modulate Transcription in Yarrowia lipolytica.

Authors:  Joshua Misa; Cory Schwartz
Journal:  Methods Mol Biol       Date:  2021

4.  Integrated bioinformatics, modelling, and gene expression analysis of the putative pentose transporter from Candida tropicalis during xylose fermentation with and without glucose addition.

Authors:  Sarah S Queiroz; Bianca Oliva; Tatiane F Silva; Fernando Segato; Maria G A Felipe
Journal:  Appl Microbiol Biotechnol       Date:  2022-06-16       Impact factor: 4.813

Review 5.  Recent progress in strategies for steroid production in yeasts.

Authors:  Yi-Qi Jiang; Jian-Ping Lin
Journal:  World J Microbiol Biotechnol       Date:  2022-04-20       Impact factor: 3.312

6.  High-Titer Production of the Fungal Anhydrotetracycline, TAN-1612, in Engineered Yeasts.

Authors:  Pedro A Baldera-Aguayo; Arden Lee; Virginia W Cornish
Journal:  ACS Synth Biol       Date:  2022-06-14       Impact factor: 5.249

Review 7.  Synthetic methylotrophic yeasts for the sustainable fuel and chemical production.

Authors:  Vanessa Wegat; Jonathan T Fabarius; Volker Sieber
Journal:  Biotechnol Biofuels Bioprod       Date:  2022-10-22

8.  Impact of overproduced heterologous protein characteristics on physiological response in Yarrowia lipolytica steady-state-maintained continuous cultures.

Authors:  Paulina Korpys-Woźniak; Piotr Kubiak; Wojciech Białas; Ewelina Celińska
Journal:  Appl Microbiol Biotechnol       Date:  2020-10-06       Impact factor: 4.813

9.  Host-Informed Expression of CRISPR Guide RNA for Genomic Engineering in Komagataella phaffii.

Authors:  Neil C Dalvie; Justin Leal; Charles A Whittaker; Yuchen Yang; Joseph R Brady; Kerry R Love; J Christopher Love
Journal:  ACS Synth Biol       Date:  2019-12-13       Impact factor: 5.110

Review 10.  The Pentose Phosphate Pathway in Yeasts-More Than a Poor Cousin of Glycolysis.

Authors:  Laura-Katharina Bertels; Lucía Fernández Murillo; Jürgen J Heinisch
Journal:  Biomolecules       Date:  2021-05-12
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