Literature DB >> 26701259

A VUV Photoionization and Ab Initio Determination of the Ionization Energy of a Gas-Phase Sugar (Deoxyribose).

Debashree Ghosh1, Amir Golan2, Lynelle K Takahashi2,3, Anna I Krylov1, Musahid Ahmed2.   

Abstract

The ionization energy of gas-phase deoxyribose was determined using tunable vacuum ultraviolet synchrotron radiation coupled to an effusive thermal source. Adiabatic and vertical ionization energies of the ground and first four excited states of α-pyranose, the structure that dominates in the gas phase, were calculated using high-level electronic structure methods. An appearance energy of 9.1(±0.05) eV was recorded, which agrees reasonably well with a theoretical value of 8.8 eV for the adiabatic ionization energy. A clear picture of the dissociative photoionization dynamics of deoxyribose emerges from the fragmentation pattern recorded using mass spectrometry and from ab initio molecular dynamics calculations. The experimental threshold 9.4 (±0.05) eV for neutral water elimination upon ionization is captured well in the calculations, and qualitative insights are provided by molecular orbital analysis and molecular dynamics snapshots along the reaction coordinate.

Entities:  

Keywords:  electronic structure calculations; fragmentation; mass spectrometry; sugars; synchrotron radiation

Year:  2011        PMID: 26701259     DOI: 10.1021/jz201446r

Source DB:  PubMed          Journal:  J Phys Chem Lett        ISSN: 1948-7185            Impact factor:   6.475


  2 in total

1.  Vacuum ultraviolet action spectroscopy of polysaccharides.

Authors:  Quentin Enjalbert; Claire Brunet; Arnaud Vernier; Abdul-Rahman Allouche; Rodolphe Antoine; Philippe Dugourd; Jérôme Lemoine; Alexandre Giuliani; Laurent Nahon
Journal:  J Am Soc Mass Spectrom       Date:  2013-05-31       Impact factor: 3.109

2.  One-electron oxidation of neutral sugar radicals of 2'-deoxyguanosine and 2'-deoxythymidine: a density functional theory (DFT) study.

Authors:  Anil Kumar; Venkata Pottiboyina; Michael D Sevilla
Journal:  J Phys Chem B       Date:  2012-07-27       Impact factor: 2.991

  2 in total

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